Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.04□□□□□ -2.08
SDC1P18827 CYCSP48-201ENST00000417124 323 ntBASIC2.04□□□□□ -2.08
SDC1P18827 EIF4EP4-201ENST00000424916 578 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SDC1P18827 AC236972.1-201ENST00000433225 199 ntBASIC2.04□□□□□ -2.08
SDC1P18827 HAUS6P2-201ENST00000433254 2404 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AL606489.2-201ENST00000433886 234 ntBASIC2.04□□□□□ -2.08
SDC1P18827 PRPS1P1-201ENST00000445305 876 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC1P18827 FDX1P2-201ENST00000450769 375 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AC011753.1-201ENST00000451001 220 ntBASIC2.04□□□□□ -2.08
SDC1P18827 SNRPFP3-201ENST00000457792 225 ntBASIC2.04□□□□□ -2.08
SDC1P18827 RNU7-180P-201ENST00000459240 63 ntBASIC2.04□□□□□ -2.08
SDC1P18827 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC1P18827 AC008526.1-201ENST00000509149 338 ntBASIC2.04□□□□□ -2.08
SDC1P18827 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.04□□□□□ -2.08
SDC1P18827 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC1P18827 AL137161.1-201ENST00000532231 390 ntBASIC2.04□□□□□ -2.08
SDC1P18827 CBX3P7-201ENST00000532876 502 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC1P18827 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC1P18827 AC012507.3-201ENST00000603556 477 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AC123912.5-201ENST00000605470 343 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AC017083.3-201ENST00000609955 700 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AC104073.3-201ENST00000610942 955 ntBASIC2.04□□□□□ -2.08
SDC1P18827 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.04□□□□□ -2.08
SDC1P18827 AL449363.1-201ENST00000617815 186 ntBASIC2.04□□□□□ -2.08
SDC1P18827 AL354950.2-201ENST00000617939 290 ntBASIC2.04□□□□□ -2.08
SDC1P18827 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC1P18827 AC068792.1-201ENST00000621354 417 ntBASIC2.04□□□□□ -2.08
SDC1P18827 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.04□□□□□ -2.08
SDC1P18827 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SDC1P18827 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
SDC1P18827 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.03□□□□□ -2.08
SDC1P18827 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SDC1P18827 RNU4-40P-201ENST00000364351 143 ntBASIC2.03□□□□□ -2.08
SDC1P18827 Y_RNA.409-201ENST00000383990 98 ntBASIC2.03□□□□□ -2.08
SDC1P18827 RNU1-52P-201ENST00000384190 164 ntBASIC2.03□□□□□ -2.08
SDC1P18827 RNU6-434P-201ENST00000384376 107 ntBASIC2.03□□□□□ -2.08
SDC1P18827 OR9R1P-201ENST00000412200 877 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.03□□□□□ -2.08
SDC1P18827 DLGAP5P1-201ENST00000430307 464 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AL365400.1-201ENST00000431854 640 ntBASIC2.03□□□□□ -2.08
SDC1P18827 RPL23AP7-203ENST00000449021 469 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.03□□□□□ -2.08
SDC1P18827 AL163973.1-201ENST00000484753 577 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC140059.1-201ENST00000489238 361 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC079804.2-201ENST00000490376 200 ntBASIC2.03□□□□□ -2.08
SDC1P18827 MTCYBP40-201ENST00000509390 1135 ntBASIC2.03□□□□□ -2.08
SDC1P18827 SNORA40.12-201ENST00000516329 111 ntBASIC2.03□□□□□ -2.08
SDC1P18827 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.03□□□□□ -2.08
SDC1P18827 MTCO3P23-201ENST00000561363 289 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC090897.2-201ENST00000581715 130 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC004223.2-201ENST00000590309 544 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.03□□□□□ -2.08
SDC1P18827 AP001330.5-201ENST00000607176 411 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC096772.1-201ENST00000609146 564 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC004908.3-201ENST00000610248 625 ntBASIC2.03□□□□□ -2.08
SDC1P18827 AC139792.3-201ENST00000623525 224 ntBASIC2.03□□□□□ -2.08
SDC1P18827 OR5AK4P-201ENST00000635912 903 ntBASIC2.03□□□□□ -2.08
SDC1P18827 MIR6863-201ENST00000636112 90 ntBASIC2.03□□□□□ -2.08
SDC1P18827 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SDC1P18827 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.09
SDC1P18827 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SDC1P18827 OR56A5-201ENST00000340110 738 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-37P-201ENST00000362692 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-1010P-201ENST00000362757 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 SNORD114-19-201ENST00000363072 75 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-11P-201ENST00000364234 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU5E-7P-201ENST00000365290 117 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNA5SP37-201ENST00000365420 130 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-25P-201ENST00000383873 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-1-201ENST00000383898 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 Y_RNA.436-201ENST00000384097 102 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-48P-201ENST00000384161 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-36P-201ENST00000384172 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-4P-201ENST00000384205 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-5P-201ENST00000384238 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-3P-201ENST00000384314 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-16P-201ENST00000384385 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-15P-201ENST00000384534 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-2-201ENST00000384627 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-29P-201ENST00000384637 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-9-201ENST00000384776 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-33P-201ENST00000384793 107 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.02□□□□□ -2.09
SDC1P18827 AC074117.2-201ENST00000417130 397 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC138623.1-201ENST00000418060 216 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.02□□□□□ -2.09
SDC1P18827 AC008267.5-201ENST00000424928 265 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.02□□□□□ -2.09
SDC1P18827 AC016691.1-201ENST00000441321 413 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.02□□□□□ -2.09
SDC1P18827 AC012308.1-201ENST00000451232 178 ntBASIC2.02□□□□□ -2.09
SDC1P18827 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.02□□□□□ -2.09
SDC1P18827 AL021397.1-201ENST00000451806 248 ntBASIC2.02□□□□□ -2.09
SDC1P18827 AC006026.2-201ENST00000457376 180 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RNU6-717P-201ENST00000459076 104 ntBASIC2.02□□□□□ -2.09
SDC1P18827 RPL9P6-201ENST00000492764 598 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms