Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NDUFA5P6-201ENST00000542110 379 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.83□□□□□ -2.12
CLDN9O95484 MIR5692A1-201ENST00000580523 69 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AC012360.2-201ENST00000609349 391 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
CLDN9O95484 AC026585.1-201ENST00000619582 524 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 uc_338.20-201ENST00000621563 178 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AC079248.2-201ENST00000623779 326 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 AC009487.4-201ENST00000624969 3585 ntBASIC1.83□□□□□ -2.12
CLDN9O95484 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLDN9O95484 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.82□□□□□ -2.12
CLDN9O95484 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLDN9O95484 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CLDN9O95484 MIR337-201ENST00000362281 93 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 SNORD56.1-201ENST00000362913 68 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 SNORD115-3-201ENST00000363100 82 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 RNU6-553P-201ENST00000364047 96 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 Y_RNA.796-201ENST00000364268 102 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 RNU6-371P-201ENST00000364283 108 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 Y_RNA.799-201ENST00000364992 102 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 MIR518A2-201ENST00000384966 87 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 AL031577.2-201ENST00000404133 280 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 RNU2-23P-201ENST00000410545 195 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 RNA5SP450-201ENST00000411206 102 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 AC096920.1-201ENST00000423991 241 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 MTND4P20-201ENST00000424125 869 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 CALM2P2-201ENST00000428512 440 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 AC000111.3-201ENST00000433478 193 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 MTCO3P5-201ENST00000433620 714 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 AL137159.1-201ENST00000452808 512 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 RNA5SP233-201ENST00000459153 113 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 RN7SL274P-201ENST00000492268 272 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 AP003392.2-201ENST00000527269 208 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 BNIP3P6-201ENST00000549284 499 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.82□□□□□ -2.12
CLDN9O95484 Z82243.1-201ENST00000609432 473 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.82□□□□□ -2.12
CLDN9O95484 AC008250.2-201ENST00000615261 205 ntBASIC1.82□□□□□ -2.12
CLDN9O95484 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CLDN9O95484 U8.3-201ENST00000363321 132 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 RNU6-1210P-201ENST00000363775 107 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 RNU6-169P-201ENST00000365336 107 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 Y_RNA.576-201ENST00000384781 102 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CLDN9O95484 AL512604.1-201ENST00000404812 257 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 RNU2-32P-201ENST00000411193 191 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 RNU6-387P-201ENST00000411331 105 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AL030996.1-201ENST00000411430 235 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AC074117.2-201ENST00000417130 397 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.81□□□□□ -2.12
CLDN9O95484 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.81□□□□□ -2.12
CLDN9O95484 AC073614.1-201ENST00000438690 650 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 SNRPFP4-201ENST00000456366 242 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AC006512.1-201ENST00000468816 291 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 RPL36AP21-201ENST00000490372 323 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.81□□□□□ -2.12
CLDN9O95484 RNU6-685P-201ENST00000517088 95 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 CYCSP27-201ENST00000527643 293 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.81□□□□□ -2.12
CLDN9O95484 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.81□□□□□ -2.12
CLDN9O95484 AC008749.1-201ENST00000597650 306 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AP000942.3-201ENST00000603702 160 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 SNRPGP17-201ENST00000603780 214 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AC138649.3-201ENST00000622154 254 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AC093648.1-201ENST00000623546 606 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 AC091932.3-201ENST00000624223 323 ntBASIC1.81□□□□□ -2.12
CLDN9O95484 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.81□□□□□ -2.12
CLDN9O95484 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 Y_RNA.355-201ENST00000365462 98 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 RNU6-116P-201ENST00000384042 109 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 MIR676-201ENST00000390702 67 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AC019129.1-201ENST00000403786 261 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 RAP1BP3-201ENST00000407180 549 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 RNA5SP390-201ENST00000410191 113 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 RNU6-195P-201ENST00000411352 109 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 RPS3AP3-201ENST00000411933 242 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 DNAJC19P4-201ENST00000440115 345 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.8□□□□□ -2.12
CLDN9O95484 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.8□□□□□ -2.12
CLDN9O95484 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.8□□□□□ -2.12
CLDN9O95484 RPL30P12-201ENST00000474666 353 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AC104806.1-201ENST00000508720 308 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CLDN9O95484 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.8□□□□□ -2.12
CLDN9O95484 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.8□□□□□ -2.12
CLDN9O95484 ANP32BP3-201ENST00000559213 706 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 MIR4498-201ENST00000577599 66 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 MIR4781-201ENST00000585250 76 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 CLIC4P2-201ENST00000601934 717 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AC090578.1-201ENST00000604955 591 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AC004908.3-201ENST00000610248 625 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AC122133.1-201ENST00000613964 233 ntBASIC1.8□□□□□ -2.12
CLDN9O95484 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms