Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL132822.1-201ENST00000617063 513 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 AC068205.3-201ENST00000636385 468 ntBASIC-0.02□□□□□ -2.41
CCDC88BA6NC98 RNU6-112P-201ENST00000363599 104 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 RNU6-444P-201ENST00000383988 108 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 MIR1302-8-201ENST00000408342 128 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 NDUFS5P4-201ENST00000412983 318 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AL121579.1-201ENST00000555129 305 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AL353765.1-201ENST00000605514 183 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AF129408.1-201ENST00000608767 431 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC004908.3-201ENST00000610248 625 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC240442.1-201ENST00000616055 283 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 SNORD114-31-201ENST00000363219 75 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 SNORD95.1-201ENST00000364099 68 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 SNORD51-201ENST00000384320 80 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AL109755.1-201ENST00000401791 649 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC010385.1-201ENST00000412374 256 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 UBE2V1P8-201ENST00000437166 265 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AL096829.2-201ENST00000446582 742 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AL441985.1-201ENST00000457727 251 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 LSM6P2-201ENST00000552208 177 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 ROCK1P1-201ENST00000573767 549 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AC091057.3-201ENST00000602684 733 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 AP001596.2-201ENST00000608410 312 ntBASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC-0.03□□□□□ -2.41
CCDC88BA6NC98 RNU6-741P-201ENST00000383889 107 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 MIR604-201ENST00000384880 94 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 RNU6-910P-201ENST00000390844 107 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AC119751.3-201ENST00000399720 670 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 RNU6ATAC8P-201ENST00000408460 126 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AC063976.4-201ENST00000421971 163 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AL669831.1-202ENST00000428504 417 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 BNIP3P26-201ENST00000600827 554 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 RAC1P9-201ENST00000604990 392 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 AL583856.2-201ENST00000606298 543 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 FAS-AS1.2-201ENST00000620386 170 ntBASIC-0.04□□□□□ -2.42
CCDC88BA6NC98 RNU6-611P-201ENST00000384276 104 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 RNU1-119P-201ENST00000391122 165 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 RNU2-15P-201ENST00000410692 191 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 RNU6-586P-201ENST00000517265 104 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AC068620.3-201ENST00000602749 560 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AC069114.2-201ENST00000604699 304 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 HMGB1P51-201ENST00000605166 638 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AC009237.15-201ENST00000610252 501 ntBASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC-0.05□□□□□ -2.42
CCDC88BA6NC98 Y_RNA.142-201ENST00000363491 102 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 Y_RNA.255-201ENST00000364581 97 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 RNU6-167P-201ENST00000384292 106 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC127391.1-201ENST00000411737 98 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 PTGES3P4-201ENST00000426243 356 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 HMGN3P1-201ENST00000453847 193 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC098869.1-201ENST00000481627 292 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 SNORA14.1-201ENST00000516113 141 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 RNA5SP255-201ENST00000516370 107 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC109329.1-201ENST00000518744 317 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC141557.1-201ENST00000540982 400 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC092106.3-201ENST00000611308 722 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC009318.4-201ENST00000620496 486 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AP003400.6-201ENST00000624698 740 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 MTND1P37-201ENST00000636562 264 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AL159152.1-201ENST00000635019 2587 ntBASIC-0.06□□□□□ -2.42
CCDC88BA6NC98 AC092447.10-201ENST00000620607 1652 ntBASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 RNU6-1327P-201ENST00000365302 105 ntBASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 RNU6-43P-201ENST00000384302 107 ntBASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 RPL21P111-201ENST00000418453 477 ntBASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AC113398.2-201ENST00000507630 558 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms