Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU7-187P-201ENST00000458985 68 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 snoU109.2-201ENST00000459316 135 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AP004217.1-201ENST00000480579 346 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC026782.1-201ENST00000512952 449 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 SNORA31.1-201ENST00000515993 133 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 SNORA31.5-201ENST00000516190 133 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC010186.2-204ENST00000537668 439 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC024153.1-201ENST00000603103 365 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC090971.5-201ENST00000621102 293 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 MTND5P10-201ENST00000603719 1809 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.146-201ENST00000363549 102 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 SNORA51.4-201ENST00000364993 124 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-827P-201ENST00000365553 106 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-43P-201ENST00000384302 107 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 MIR517A-201ENST00000385001 87 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 RNA5SP171-201ENST00000391071 115 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 SNORA75.4-201ENST00000391278 119 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-1077P-201ENST00000410506 102 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 RN7SKP58-201ENST00000411010 305 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 MTCO2P12-201ENST00000427426 682 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 YME1L1P1-201ENST00000429435 297 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 HMGN2P20-201ENST00000437531 273 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AL714022.1-201ENST00000439897 151 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC124916.1-201ENST00000444020 547 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 HMGN2P10-201ENST00000448085 265 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC010099.1-201ENST00000455434 375 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 ELOCP24-201ENST00000456370 334 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 RNU7-23P-201ENST00000459465 62 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 U8.21-201ENST00000459536 136 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC018437.1-201ENST00000492214 406 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC114801.2-201ENST00000503825 781 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 MTCYBP40-201ENST00000509390 1135 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 TRAV32-201ENST00000553993 340 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AL121821.2-201ENST00000556081 394 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AL451007.1-201ENST00000595491 289 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC018889.1-201ENST00000605372 397 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC019176.2-201ENST00000611579 315 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC004852.3-201ENST00000614131 326 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC007742.2-201ENST00000618226 398 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AL669831.3-213ENST00000636676 183 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 AC233263.6-201ENST00000631132 1963 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 KPNA2P1-201ENST00000458289 1591 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 CDC27P3-201ENST00000635418 1910 ntBASIC3.54□□□□□ -1.84
LIMCH1Q9UPQ0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 MTND4P23-201ENST00000447723 1363 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 MIR22-201ENST00000362190 85 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 RNA5SP267-201ENST00000364893 126 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-898P-201ENST00000365627 104 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 U3.19-201ENST00000390893 196 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.579-201ENST00000390939 94 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 RNA5SP120-201ENST00000410900 112 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AC092185.1-201ENST00000491371 97 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AK3P2-201ENST00000507976 429 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-307P-201ENST00000516743 106 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AP000867.2-201ENST00000532468 320 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AC093249.1-201ENST00000567049 203 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 CPDP1-201ENST00000579660 283 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 VN1R107P-201ENST00000601784 209 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 MTND4LP5-201ENST00000605152 292 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AL121917.1-203ENST00000605534 577 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 AP000654.2-201ENST00000605633 586 ntBASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LIMCH1Q9UPQ0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.53□□□□□ -1.85
LIMCH1Q9UPQ0 RPL9P7-201ENST00000330965 580 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 SNORA63.1-201ENST00000362493 131 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 SNORA71.3-201ENST00000362582 128 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-78P-201ENST00000362897 107 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.151-201ENST00000363566 112 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-596P-201ENST00000365395 98 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-198P-201ENST00000384258 104 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 SNORA54-201ENST00000384281 123 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-790P-201ENST00000384479 105 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.594-201ENST00000410373 140 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RN7SKP220-201ENST00000410611 288 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-325P-201ENST00000411132 105 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AL354751.2-201ENST00000415471 210 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms