Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC1.36□□□□□ -2.19
VAPAQ9P0L0 MIR1248-201ENST00000629190 106 ntBASIC1.36□□□□□ -2.19
VAPAQ9P0L0 Y_RNA.99-201ENST00000363138 105 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 RNU6-23P-201ENST00000363283 107 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 RNU4-13P-201ENST00000364019 141 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 RNU6-157P-201ENST00000383957 107 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 RNU6-439P-201ENST00000384188 106 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 SNORA48.1-201ENST00000390879 135 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 RNA5SP100-201ENST00000410903 110 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 RNA5SP59-201ENST00000410922 110 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 CYCSP49-201ENST00000420810 319 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 MTCYBP5-201ENST00000423752 1135 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 USP9YP17-201ENST00000444617 696 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 HSPE1P23-201ENST00000509838 286 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AL356057.1-201ENST00000533798 831 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AC010900.2-201ENST00000604508 210 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AC116312.1-201ENST00000606841 314 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AP002782.1-201ENST00000623107 614 ntBASIC1.35□□□□□ -2.19
VAPAQ9P0L0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.35□□□□□ -2.19
VAPAQ9P0L0 CBX3P1-201ENST00000325243 554 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
VAPAQ9P0L0 MIR122-201ENST00000385044 85 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC1.34□□□□□ -2.19
VAPAQ9P0L0 MTCO3P46-201ENST00000425787 232 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 RPS15AP10-201ENST00000432472 382 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.34□□□□□ -2.19
VAPAQ9P0L0 HMGB1P31-201ENST00000437242 427 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 GDI2P2-201ENST00000445131 608 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AC007677.1-201ENST00000445757 515 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AC006026.2-201ENST00000457376 180 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AC005908.1-201ENST00000468701 347 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 MTCYBP35-201ENST00000503630 1137 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.34□□□□□ -2.19
VAPAQ9P0L0 ADI1P3-201ENST00000549509 470 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AP002360.4-201ENST00000606980 481 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 OR4G3P-201ENST00000633500 913 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 ZNF680P1-201ENST00000436625 1469 ntBASIC1.34□□□□□ -2.19
VAPAQ9P0L0 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.2
VAPAQ9P0L0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 U8.1-201ENST00000362843 134 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 Y_RNA.97-201ENST00000363094 102 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 MIR578-201ENST00000384828 96 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 SNORA26.9-201ENST00000391322 122 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC118469.1-201ENST00000442943 488 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 MTND1P12-201ENST00000455231 147 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AP000797.1-201ENST00000478870 387 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 RPL30P1-201ENST00000488676 339 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC009646.1-201ENST00000510455 318 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 RNU6-123P-201ENST00000516163 102 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 SNORA31.24-201ENST00000517232 57 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 COPS8P3-201ENST00000526024 482 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC137800.2-201ENST00000574375 120 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 SNORD53B-201ENST00000577887 78 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AL353778.1-201ENST00000603149 408 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC130454.1-201ENST00000622948 401 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC002543.1-201ENST00000299783 1954 ntBASIC1.33□□□□□ -2.2
VAPAQ9P0L0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
VAPAQ9P0L0 AC245060.5-201ENST00000610778 3293 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AC073343.1-201ENST00000328239 651 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 RNU1-62P-201ENST00000362599 164 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 SNORD56.2-201ENST00000363242 71 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 RNA5SP493-201ENST00000364115 91 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 RNU6-60P-201ENST00000364792 103 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 RNU6-384P-201ENST00000364900 104 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 RNA5SP126-201ENST00000365092 109 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
VAPAQ9P0L0 SNORA67.6-201ENST00000391093 99 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 RPL17P50-201ENST00000396131 546 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AC114491.1-201ENST00000416095 246 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
VAPAQ9P0L0 NCOR1P3-201ENST00000420479 303 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AL513185.2-201ENST00000425543 193 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 CBX3P6-201ENST00000430257 527 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 SNRPGP13-201ENST00000442212 177 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AL035666.1-201ENST00000446195 348 ntBASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.32□□□□□ -2.2
VAPAQ9P0L0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.32□□□□□ -2.2
VAPAQ9P0L0 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC1.32□□□□□ -2.2
VAPAQ9P0L0 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms