Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 Y_RNA.527-201ENST00000384573 102 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.533-201ENST00000384596 114 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.645-201ENST00000391229 102 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.605-201ENST00000410577 105 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNU6-628P-201ENST00000410675 107 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AL139247.1-201ENST00000422768 325 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 MRPS18CP6-201ENST00000423587 223 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AL513124.1-201ENST00000450410 614 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AC006445.2-201ENST00000510061 472 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNU6-120P-201ENST00000516077 103 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNU6-579P-201ENST00000516879 102 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AL590705.4-201ENST00000532209 134 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AC016256.1-201ENST00000547971 354 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AC008269.2-201ENST00000561915 1105 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AC104581.2-201ENST00000572227 430 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 AC073308.1-201ENST00000623696 305 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 SNORD50.1-201ENST00000362987 71 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 RNU4-42P-201ENST00000364738 142 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 RNU6-898P-201ENST00000365627 104 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.557-201ENST00000384680 107 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 RNU6-823P-201ENST00000391042 103 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 MIR1252-201ENST00000408861 65 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 HMGB3P2-201ENST00000411913 584 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 RPL23AP82-202ENST00000427528 469 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 MTND3P9-201ENST00000429526 346 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 IPO7P1-201ENST00000442031 636 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 HMGN2P10-201ENST00000448085 265 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AC079354.2-201ENST00000453523 154 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AL353752.1-201ENST00000454946 260 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 MTND4LP22-201ENST00000508209 276 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AC026402.1-201ENST00000513642 170 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 RNU7-175P-201ENST00000515915 61 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 MIR2355-201ENST00000517199 87 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AL158827.2-201ENST00000602494 330 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AL021879.1-201ENST00000611756 288 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 U4.1-201ENST00000620349 87 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 AL691447.3-201ENST00000635020 330 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 MIR3529-201ENST00000637713 78 ntBASIC3.24□□□□□ -1.89
VSX1Q9NZR4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VSX1Q9NZR4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 RNU1-100P-201ENST00000365255 165 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 MIR184-201ENST00000384962 84 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 SNORA69.1-201ENST00000390904 137 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 U3.39-201ENST00000408569 239 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 SNORA57.3-201ENST00000411095 141 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 RAB9AP3-201ENST00000412737 573 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC099548.1-201ENST00000421443 426 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 RAB9AP1-201ENST00000449393 573 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 RPL30P14-201ENST00000482744 348 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC006483.1-201ENST00000487308 313 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC092185.1-201ENST00000491371 97 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 RPS27AP10-201ENST00000496103 208 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC097462.2-201ENST00000504623 481 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC105758.1-201ENST00000506038 399 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 MIR3160-1-201ENST00000577972 85 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AL451007.1-201ENST00000595491 289 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC124312.5-201ENST00000604451 268 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 SNORD58B-201ENST00000607313 66 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC100812.1-201ENST00000607622 580 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AL731566.2-201ENST00000618971 317 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC073073.2-201ENST00000609827 2578 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VSX1Q9NZR4 AC091812.1-201ENST00000432235 1948 ntBASIC3.23□□□□□ -1.89
VSX1Q9NZR4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.48-201ENST00000362710 103 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 U3.6-201ENST00000363622 211 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RN7SKP280-201ENST00000364196 304 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RNU4-50P-201ENST00000364361 141 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.276-201ENST00000364732 109 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RNU4-9P-201ENST00000364951 139 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RNU6-1280P-201ENST00000365211 107 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms