Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 MFSD8-236ENST00000641509 4050 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 RNU1-105P-201ENST00000363470 161 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 MIR544A-201ENST00000384855 91 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 RNU6-101P-201ENST00000410323 104 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC023141.4-201ENST00000412031 328 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC113618.1-201ENST00000416747 285 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AL031183.1-201ENST00000457667 207 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC104564.1-201ENST00000493028 407 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 RNU7-175P-201ENST00000515915 61 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 RNA5SP208-201ENST00000516156 78 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 SNORA31.23-201ENST00000517219 133 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC025281.1-201ENST00000567026 265 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC100812.1-201ENST00000607622 580 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AL162373.1-201ENST00000620433 407 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 CR392039.5-201ENST00000623201 510 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 MTND5P16-201ENST00000460269 1703 ntBASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
TRIM39Q9HCM9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RNU4-9P-201ENST00000364951 139 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 MIR628-201ENST00000385229 95 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 PTMAP2-201ENST00000397627 327 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RNU2-49P-201ENST00000410666 184 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AL133547.1-201ENST00000448546 220 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RNU7-170P-201ENST00000459303 61 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RNU4-77P-201ENST00000516692 156 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC016256.1-201ENST00000547971 354 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 DNAJC8P1-201ENST00000554535 372 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 MIR5047-201ENST00000579212 100 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC060766.3-201ENST00000591442 263 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC016727.2-201ENST00000603988 621 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC039056.2-201ENST00000622261 511 ntBASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TRIM39Q9HCM9 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MTND5P27-201ENST00000428871 1720 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC010889.1-201ENST00000566193 2666 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 RNU6-1141P-201ENST00000364520 107 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 RNU4-42P-201ENST00000364738 142 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SNORA62.3-201ENST00000365110 153 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.389-201ENST00000383924 113 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.455-201ENST00000384230 98 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.526-201ENST00000384572 110 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 RNU6-1222P-201ENST00000384615 107 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MIR147B-201ENST00000390185 80 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SNORA69.1-201ENST00000390904 137 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SAR1AP2-201ENST00000392696 594 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AL353705.4-201ENST00000449661 238 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SNORA84-201ENST00000459229 133 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SNRPGP7-201ENST00000469016 106 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC016632.1-201ENST00000503994 196 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SNORA40.14-201ENST00000516543 86 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.706-201ENST00000516933 99 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC009812.2-201ENST00000517657 457 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC007375.1-201ENST00000554513 578 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC104581.2-201ENST00000572227 430 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC091152.3-201ENST00000604227 325 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC006077.1-201ENST00000604746 343 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MIR1244-1-201ENST00000612829 85 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 AC008121.3-201ENST00000618726 433 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MIR1244-3-201ENST00000635744 85 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MIR4272-201ENST00000635924 64 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MIR1244-2-201ENST00000636449 85 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 MIR1244-4-202ENST00000636813 85 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 RBBP8P1-201ENST00000449447 1844 ntBASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.67□□□□□ -1.82
TRIM39Q9HCM9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RNA5SP124-201ENST00000362739 110 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 RNU6-1286P-201ENST00000383871 107 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.527-201ENST00000384573 102 ntBASIC3.66□□□□□ -1.82
TRIM39Q9HCM9 MIR767-201ENST00000390228 109 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms