Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR183-201ENST00000384958 110 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-1156P-201ENST00000410365 100 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 RNU2-23P-201ENST00000410545 195 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.605-201ENST00000410577 105 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 BPY2DP-201ENST00000422208 265 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AL353752.1-201ENST00000454946 260 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC006026.2-201ENST00000457376 180 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MTATP8P1-201ENST00000467115 207 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC093663.1-201ENST00000497190 394 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC026784.1-201ENST00000507986 352 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC107934.2-201ENST00000518653 310 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR5701-3-201ENST00000578890 82 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR5701-1-201ENST00000585138 82 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 HMGN2P15-201ENST00000585707 270 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 VN1R107P-201ENST00000601784 209 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR1244-1-201ENST00000612829 85 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR5701-2-201ENST00000615634 82 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR1244-3-201ENST00000635744 85 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR1244-2-201ENST00000636449 85 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 MIR1244-4-202ENST00000636813 85 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 U6.105-201ENST00000637379 88 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC091812.1-201ENST00000432235 1948 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 AC008669.1-201ENST00000565823 2178 ntBASIC3.68□□□□□ -1.82
PCIF1Q9H4Z3 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.39-201ENST00000362620 98 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.123-201ENST00000363338 102 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-595P-201ENST00000363944 107 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RNY3P11-201ENST00000364153 102 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RNU4-42P-201ENST00000364738 142 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 SNORD116-20-201ENST00000384529 92 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RPL23AP82-202ENST00000427528 469 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC005300.1-201ENST00000428401 373 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 HMGN2P10-201ENST00000448085 265 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC125238.1-201ENST00000448842 249 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC112492.4-201ENST00000456549 352 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RPS4XP2-201ENST00000458402 793 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 snoU13.28-201ENST00000459235 104 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC091153.1-201ENST00000466297 402 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RPL32P34-201ENST00000486380 400 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC010186.2-204ENST00000537668 439 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC004584.2-201ENST00000570407 410 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 MIR4425-201ENST00000580572 84 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 MIR92B-201ENST00000607575 96 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 RNVU1-4-201ENST00000612985 164 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AL078596.1-201ENST00000624856 447 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 MIR4272-201ENST00000635924 64 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AC241585.2-209ENST00000638217 143 ntBASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
PCIF1Q9H4Z3 AL356274.2-201ENST00000624379 3752 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-527P-201ENST00000363425 104 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-450P-201ENST00000364654 107 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 Y_RNA.455-201ENST00000384230 98 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-784P-201ENST00000384330 106 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AP000567.1-201ENST00000406413 156 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 FTH1P15-201ENST00000406984 280 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AP000275.1-201ENST00000411943 390 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC096644.2-201ENST00000429278 159 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AL358232.1-201ENST00000448030 501 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 RPL23AP67-201ENST00000465341 474 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 SNRPGP3-201ENST00000469405 227 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 MRPL42P6-201ENST00000486397 371 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC015911.1-201ENST00000495111 156 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 RNU6-475P-201ENST00000516073 104 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC113195.1-201ENST00000579952 141 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC008739.3-201ENST00000603262 127 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC019176.2-201ENST00000611579 315 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC012314.7-201ENST00000619693 93 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 MIR6075-201ENST00000620782 95 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AC110491.1-201ENST00000562191 2010 ntBASIC3.66□□□□□ -1.82
PCIF1Q9H4Z3 AF127577.6-201ENST00000623352 2191 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 148 ms