Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RPL38P4-201ENST00000502376 214 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 TBCAP3-201ENST00000512475 312 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 SNORA31.6-201ENST00000516241 130 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RNA5SP320-201ENST00000516263 124 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 Y_RNA.687-201ENST00000516558 91 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 MTND4P7-201ENST00000523876 130 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 BNIP3P6-201ENST00000549284 499 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 OR11H5P-201ENST00000554039 926 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.25□□□□□ -2.05
LIME1Q9H400 MIR3941-201ENST00000582572 103 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AC025754.2-201ENST00000606491 432 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.25□□□□□ -2.05
LIME1Q9H400 AC138627.2-201ENST00000624202 601 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 Z69720.2-201ENST00000624755 279 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.25□□□□□ -2.05
LIME1Q9H400 CTSLP2-204ENST00000629029 392 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.25□□□□□ -2.05
LIME1Q9H400 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
LIME1Q9H400 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LIME1Q9H400 MTND4P14-201ENST00000435799 1354 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.24□□□□□ -2.05
LIME1Q9H400 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LIME1Q9H400 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
LIME1Q9H400 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
LIME1Q9H400 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 Y_RNA.167-201ENST00000363735 109 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 RNU6-82P-201ENST00000363970 107 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 RNU6-1090P-201ENST00000364065 94 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 SNORD56.5-201ENST00000364281 72 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 RNU6-1280P-201ENST00000365211 107 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 Y_RNA.402-201ENST00000383972 102 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 RNU6-1083P-201ENST00000384022 107 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 Y_RNA.450-201ENST00000384198 113 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 FO393413.1-201ENST00000402892 195 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 FTH1P15-201ENST00000406984 280 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 MICF-203ENST00000432679 129 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 UBE2V1P8-201ENST00000437166 265 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AP000705.1-201ENST00000454567 350 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AC091885.1-201ENST00000506658 268 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AC011352.1-201ENST00000512300 793 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 SNORD60.2-201ENST00000516883 86 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 CENPUP1-201ENST00000526649 1202 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 AC004486.1-201ENST00000546846 233 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AL118558.2-201ENST00000556294 238 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AC015712.3-201ENST00000559380 164 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AC136619.2-201ENST00000563361 631 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.24□□□□□ -2.05
LIME1Q9H400 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LIME1Q9H400 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 RMST_7.1-201ENST00000621935 268 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 AC073869.6-201ENST00000640656 341 ntBASIC2.24□□□□□ -2.05
LIME1Q9H400 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
LIME1Q9H400 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.23□□□□□ -2.05
LIME1Q9H400 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.23□□□□□ -2.05
LIME1Q9H400 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.23□□□□□ -2.05
LIME1Q9H400 RNU6-266P-201ENST00000364225 107 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RNU6-522P-201ENST00000364497 107 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 Y_RNA.324-201ENST00000365165 102 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RNU6-487P-201ENST00000365430 104 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RNU6-19P-201ENST00000384718 107 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RNA5SP210-201ENST00000391034 120 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RNU6-1068P-201ENST00000410958 103 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RPLP0P7-201ENST00000416050 667 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 SNRPEP10-201ENST00000420249 274 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 MTCO1P20-201ENST00000425366 358 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AL139415.2-201ENST00000431968 163 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AL591806.2-201ENST00000433122 173 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AC004383.1-201ENST00000438135 289 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 HMGB1P18-201ENST00000438801 619 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RPS15AP7-201ENST00000439294 405 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.23□□□□□ -2.05
LIME1Q9H400 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.23□□□□□ -2.05
LIME1Q9H400 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.23□□□□□ -2.05
LIME1Q9H400 snoU13.23-201ENST00000458863 104 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RPL7P43-201ENST00000478876 753 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 MRPL42P6-201ENST00000486397 371 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RPS27P27-201ENST00000498779 255 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AC079140.5-201ENST00000507882 310 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LIME1Q9H400 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.23□□□□□ -2.05
LIME1Q9H400 RNA5SP401-201ENST00000515920 127 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AL356575.1-201ENST00000603008 283 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AC019159.1-201ENST00000605094 187 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 RNU6-91P-201ENST00000607774 107 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms