Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.5□□□□□ -1.69
TRAIPQ9BWF2 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 SNORA60-201ENST00000362396 134 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 RNU5B-2P-201ENST00000363036 113 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 RNU6-529P-201ENST00000363383 104 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 RNU6-1210P-201ENST00000363775 107 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 SNORA63C-201ENST00000364578 129 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 SNORD14.1-201ENST00000365609 90 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC006011.1-201ENST00000442758 349 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 SNORA25.11-201ENST00000515935 105 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 SNORA40.14-201ENST00000516543 86 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 MIR2355-201ENST00000517199 87 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AC074050.1-201ENST00000563247 211 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AL133393.1-201ENST00000603277 287 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 AL137843.1-201ENST00000605078 385 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 MIR6875-201ENST00000617506 72 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 MIR4272-201ENST00000635924 64 ntBASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.49□□□□□ -1.69
TRAIPQ9BWF2 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 RNY3P11-201ENST00000364153 102 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 SNORA26.3-201ENST00000391119 136 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 ARF4P2-201ENST00000430209 526 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 snoU13.14-201ENST00000459372 104 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 RN7SL132P-201ENST00000478131 296 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AF186996.7-201ENST00000492781 209 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 ANXA2P1-201ENST00000505539 926 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC017037.1-201ENST00000508460 471 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 RNU5F-2P-201ENST00000516066 82 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 Y_RNA.720-201ENST00000517166 92 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC103810.1-201ENST00000579873 453 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 MIR4680-201ENST00000580906 66 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC244505.7-201ENST00000599675 272 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AL162713.1-201ENST00000604480 262 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC116312.1-201ENST00000606841 314 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 GABRG2-229ENST00000641017 3628 ntBASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.48□□□□□ -1.69
TRAIPQ9BWF2 Z82217.1-201ENST00000625157 8149 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 AC091812.1-201ENST00000432235 1948 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 Y_RNA.106-201ENST00000363189 100 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 Y_RNA.358-201ENST00000365491 99 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 SNORA36A-201ENST00000384221 132 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 RNU6-17P-201ENST00000384245 107 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 RNU6-18P-201ENST00000384527 107 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 SNORA48.7-201ENST00000391302 135 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 Y_RNA.592-201ENST00000410274 109 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 USP9YP16-201ENST00000430287 407 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 GOT2P5-201ENST00000433995 546 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 USP9YP23-201ENST00000455085 407 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 RN7SL585P-201ENST00000470538 280 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 HMGB1P35-201ENST00000503360 598 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 SCARNA17.1-201ENST00000516211 143 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 RNU2-53P-201ENST00000516257 147 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 SCARNA17.2-201ENST00000516334 143 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 RNU6-764P-201ENST00000516396 105 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 RNU6-911P-201ENST00000516523 104 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 AC027176.1-201ENST00000560204 514 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 CYP4A27P-201ENST00000567218 190 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 AC010928.2-201ENST00000588017 287 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 Z98751.3-201ENST00000604447 521 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 SCARNA17.4-201ENST00000614296 143 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 AC087588.2-201ENST00000617667 426 ntBASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.47□□□□□ -1.69
TRAIPQ9BWF2 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
TRAIPQ9BWF2 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 AL512633.1-201ENST00000399931 655 ntBASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 RNA5SP39-201ENST00000411245 120 ntBASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 AC011742.1-201ENST00000431448 434 ntBASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 MTCO3P8-201ENST00000453691 755 ntBASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 SNORA31.6-201ENST00000516241 130 ntBASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 SNORA31.16-201ENST00000516773 139 ntBASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.46□□□□□ -1.7
TRAIPQ9BWF2 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms