Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC100830.2-201ENST00000581636 240 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC104985.2-201ENST00000620598 500 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC244517.12-201ENST00000623581 663 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 MIR1302-1-201ENST00000637932 143 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC112487.2-201ENST00000637950 304 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC010889.1-201ENST00000566193 2666 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.53□□□□□ -1.84
NUP88Q99567 Y_RNA.135-201ENST00000363439 95 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 RPL37P10-201ENST00000412884 288 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 PTGES3P4-201ENST00000426243 356 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 AL591043.1-201ENST00000432461 424 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 AC107083.1-201ENST00000439643 279 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 AL441985.1-201ENST00000457727 251 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 RPS27P26-201ENST00000494583 239 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 RAC1P5-201ENST00000512182 576 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 RNU1-54P-201ENST00000517181 120 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 RPS3AP23-202ENST00000574601 686 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 AL670379.10-201ENST00000604330 253 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 AL670379.9-201ENST00000605428 253 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 MIR6128-201ENST00000615528 109 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 AC097372.5-201ENST00000623665 376 ntBASIC3.53□□□□□ -1.84
NUP88Q99567 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.53□□□□□ -1.84
NUP88Q99567 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NUP88Q99567 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NUP88Q99567 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.52□□□□□ -1.85
NUP88Q99567 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP88Q99567 MTND4P29-201ENST00000503122 1372 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NUP88Q99567 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NUP88Q99567 RNU6-428P-201ENST00000362942 107 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 RNU6-790P-201ENST00000384479 105 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 RNU2-41P-201ENST00000410991 178 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 RNU6-1245P-201ENST00000411130 106 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 EEF1A1P41-201ENST00000414667 207 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP88Q99567 AC022018.1-201ENST00000430685 241 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AL139132.1-201ENST00000431587 344 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 MTND3P23-201ENST00000431980 347 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.52□□□□□ -1.85
NUP88Q99567 Y_RNA.635-201ENST00000459041 101 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 RNU6-1037P-201ENST00000459571 107 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 MTND4LP22-201ENST00000508209 276 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 RNU5F-8P-201ENST00000515941 111 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.52□□□□□ -1.85
NUP88Q99567 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.52□□□□□ -1.85
NUP88Q99567 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.52□□□□□ -1.85
NUP88Q99567 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.52□□□□□ -1.85
NUP88Q99567 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.52□□□□□ -1.85
NUP88Q99567 AC009314.1-201ENST00000603871 304 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AC107294.3-201ENST00000609211 526 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AL132765.2-201ENST00000610812 351 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AC010378.1-201ENST00000619270 362 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 AC110079.1-202ENST00000635213 138 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.52□□□□□ -1.85
NUP88Q99567 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.52□□□□□ -1.85
NUP88Q99567 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
NUP88Q99567 ZNF826P-207ENST00000622273 1910 ntBASIC3.52□□□□□ -1.85
NUP88Q99567 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NUP88Q99567 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
NUP88Q99567 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
NUP88Q99567 Y_RNA.384-201ENST00000383909 102 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 RNU6-95P-201ENST00000384697 107 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 RNU6-750P-201ENST00000390946 107 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 RPL21P3-201ENST00000395517 478 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.51□□□□□ -1.85
NUP88Q99567 AC096649.2-201ENST00000416186 393 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.51□□□□□ -1.85
NUP88Q99567 AC146507.2-201ENST00000460608 476 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 MED28P2-201ENST00000475771 317 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 GZMAP1-201ENST00000503054 631 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 MTND5P5-201ENST00000503764 376 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.51□□□□□ -1.85
NUP88Q99567 Y_RNA.691-201ENST00000516611 103 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 SNORD19.2-201ENST00000516978 73 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AC093331.1-201ENST00000521474 169 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.51□□□□□ -1.85
NUP88Q99567 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.51□□□□□ -1.85
NUP88Q99567 RAB11AP2-201ENST00000545905 639 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AC024153.1-201ENST00000603103 365 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.51□□□□□ -1.85
NUP88Q99567 MIR7106-201ENST00000612419 65 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AC007318.2-201ENST00000620999 243 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 U4.7-201ENST00000638126 106 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NUP88Q99567 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NUP88Q99567 AC000403.1-201ENST00000613696 3585 ntBASIC3.51□□□□□ -1.85
NUP88Q99567 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.51□□□□□ -1.85
NUP88Q99567 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
NUP88Q99567 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.5□□□□□ -1.85
NUP88Q99567 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NUP88Q99567 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
NUP88Q99567 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.5□□□□□ -1.85
NUP88Q99567 SNORD56.1-201ENST00000362913 68 ntBASIC3.5□□□□□ -1.85
NUP88Q99567 RNU6-797P-201ENST00000363101 109 ntBASIC3.5□□□□□ -1.85
NUP88Q99567 Y_RNA.510-201ENST00000384511 114 ntBASIC3.5□□□□□ -1.85
NUP88Q99567 MIR548K-201ENST00000408406 116 ntBASIC3.5□□□□□ -1.85
NUP88Q99567 AC245054.2-201ENST00000415639 319 ntBASIC3.5□□□□□ -1.85
NUP88Q99567 AL117339.3-201ENST00000418733 162 ntBASIC3.5□□□□□ -1.85
NUP88Q99567 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 344.5 ms