Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL353743.1-202ENST00000431724 1695 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.65-201ENST00000362846 100 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 SNORD56.1-201ENST00000362913 68 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 SNORD32A-201ENST00000364805 84 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.462-201ENST00000384268 102 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 RNU6-937P-201ENST00000384325 106 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 SNORD58.1-201ENST00000391313 66 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 CRYBB2P1-203ENST00000415709 538 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 PIGPP3-201ENST00000425307 415 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AC016700.2-201ENST00000446011 156 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AC125238.1-201ENST00000448842 249 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 RPS4XP13-201ENST00000483219 789 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AC130289.1-201ENST00000577321 73 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 BX284668.6-201ENST00000606899 438 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNU6-1266P-201ENST00000362794 105 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 SNORD113-8-201ENST00000363497 74 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNY1-201ENST00000364228 113 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNU6-879P-201ENST00000364328 108 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNA5SP515-201ENST00000364570 118 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.277-201ENST00000364754 102 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNU6-142P-201ENST00000384019 107 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 SNORA29-201ENST00000384183 140 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 UBA52P6-201ENST00000399822 382 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNU4-61P-201ENST00000411243 107 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 EIF1P2-201ENST00000428233 350 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 AC007389.2-201ENST00000434630 306 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RPS15AP7-201ENST00000439294 405 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 AP000870.1-201ENST00000472927 406 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RNU4-71P-201ENST00000516258 113 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 RN7SKP40-201ENST00000517211 242 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 SNORA81.3-201ENST00000517283 198 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 IGKV2D-19-201ENST00000523346 262 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 VN1R85P-201ENST00000601587 426 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 AL356157.2-201ENST00000605122 111 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 AC110741.2-201ENST00000605278 268 ntBASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
PTCHD1Q96NR3 ZNF826P-207ENST00000622273 1910 ntBASIC3.78□□□□□ -1.81
PTCHD1Q96NR3 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU6-280P-201ENST00000364145 104 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU1-140P-201ENST00000365040 165 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU6-926P-201ENST00000384075 107 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU6-318P-201ENST00000384283 103 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 SNORA57.1-201ENST00000391227 145 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU1-139P-201ENST00000391307 165 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 MIR1251-201ENST00000408552 70 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 NDUFS5P4-201ENST00000412983 318 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC074117.2-201ENST00000417130 397 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 YPEL5P1-201ENST00000419731 367 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RPL23AP95-201ENST00000426806 265 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC007969.2-201ENST00000441891 191 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 PRELID3BP1-201ENST00000457142 540 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RN7SL271P-201ENST00000487601 295 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RPS27AP10-201ENST00000496103 208 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC097462.2-201ENST00000504623 481 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU6-1114P-201ENST00000516022 107 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RNU6-496P-201ENST00000516145 99 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 SCARNA24.2-201ENST00000516968 130 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 CR383656.8-201ENST00000549046 145 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 MIR4286-201ENST00000580651 93 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AL606490.9-201ENST00000603331 271 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 AC019159.1-201ENST00000605094 187 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 MIR6875-201ENST00000617506 72 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 MIR6500-201ENST00000622700 86 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 SNORA43.4-201ENST00000629559 138 ntBASIC3.77□□□□□ -1.81
PTCHD1Q96NR3 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms