Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC42Q96M95 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC42Q96M95 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC42Q96M95 AL589872.1-201ENST00000426602 288 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AL669831.1-202ENST00000428504 417 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.99□□□□□ -2.25
CCDC42Q96M95 ZNF886P-201ENST00000450781 723 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC108078.1-201ENST00000508073 725 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC42Q96M95 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 RN7SKP219-201ENST00000516825 296 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC090115.3-201ENST00000553218 849 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AL157871.3-201ENST00000557231 293 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC092325.1-201ENST00000566449 554 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 AC137800.2-201ENST00000574375 120 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 MTCYBP33-201ENST00000575007 1130 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC42Q96M95 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC42Q96M95 MIR378A-201ENST00000362177 66 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 SNORA4.3-201ENST00000365564 137 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 RNU6-1222P-201ENST00000384615 107 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC42Q96M95 MTND4P15-201ENST00000437913 1033 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.98□□□□□ -2.25
CCDC42Q96M95 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC42Q96M95 DEFB108A-201ENST00000530110 222 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.98□□□□□ -2.25
CCDC42Q96M95 AL136520.1-202ENST00000555494 763 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC0.98□□□□□ -2.25
CCDC42Q96M95 AC022513.1-201ENST00000624512 117 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 AP003485.1-201ENST00000625093 753 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 MTND5P42-201ENST00000637720 498 ntBASIC0.98□□□□□ -2.25
CCDC42Q96M95 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC42Q96M95 SNORD114-6-201ENST00000364393 72 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 RNU6-278P-201ENST00000390945 109 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 PIGPP2-201ENST00000411569 458 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC42Q96M95 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.97□□□□□ -2.25
CCDC42Q96M95 EEF1E1P1-201ENST00000446998 430 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC42Q96M95 RNU6-333P-201ENST00000459117 107 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 AC130509.1-201ENST00000464158 433 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.97□□□□□ -2.25
CCDC42Q96M95 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.97□□□□□ -2.25
CCDC42Q96M95 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC42Q96M95 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC42Q96M95 MIR1273C-201ENST00000578669 77 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 AC078795.2-201ENST00000602835 1252 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 AC018926.1-201ENST00000616335 435 ntBASIC0.97□□□□□ -2.25
CCDC42Q96M95 AL589826.1-201ENST00000340697 249 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 Y_RNA.33-201ENST00000362591 102 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 RNU6-360P-201ENST00000390944 104 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 MIR1284-201ENST00000408337 120 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 RNA5SP390-201ENST00000410191 113 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 Y_RNA.597-201ENST00000410463 100 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 AC009518.2-201ENST00000418056 731 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 C8orf59P1-201ENST00000429930 303 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 RPS15AP10-201ENST00000432472 382 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.96□□□□□ -2.26
CCDC42Q96M95 MTCO2P25-201ENST00000447065 681 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 MTND1P3-201ENST00000484956 952 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.96□□□□□ -2.26
CCDC42Q96M95 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.96□□□□□ -2.26
CCDC42Q96M95 RNU7-40P-201ENST00000516397 64 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 RNA5SP404-201ENST00000517118 132 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 OR8K2P-201ENST00000524645 927 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC42Q96M95 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.96□□□□□ -2.26
CCDC42Q96M95 AC022022.2-201ENST00000602989 360 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 AC099785.1-201ENST00000605697 437 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 AP002802.2-201ENST00000605877 235 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.96□□□□□ -2.26
CCDC42Q96M95 AC099654.8-201ENST00000637757 681 ntBASIC0.96□□□□□ -2.26
CCDC42Q96M95 snoU2_19.1-201ENST00000362361 80 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 FCF1P10-201ENST00000407590 479 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 EIF1P1-201ENST00000421436 341 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 FTH1P12-201ENST00000432137 551 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC42Q96M95 MTCO1P27-201ENST00000448269 226 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 RPS27P1-201ENST00000450552 247 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 RNU1-131P-201ENST00000458943 161 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 RNU6-914P-201ENST00000516749 109 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC42Q96M95 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC42Q96M95 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
CCDC42Q96M95 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC42Q96M95 MIR3937-201ENST00000580135 106 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 NIFKP6-201ENST00000598115 845 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC42Q96M95 AL355472.4-201ENST00000610233 626 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 AC068880.4-201ENST00000623082 495 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 AL163152.1-201ENST00000642001 374 ntBASIC0.95□□□□□ -2.26
CCDC42Q96M95 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 RNU6-212P-201ENST00000362642 104 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 Y_RNA.140-201ENST00000363474 103 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 RNA5SP99-201ENST00000364020 114 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 Y_RNA.255-201ENST00000364581 97 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms