Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC004584.2-201ENST00000570407 410 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AC098826.3-201ENST00000603823 466 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AP000787.2-201ENST00000604432 568 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AC123912.5-201ENST00000605470 343 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AL137790.1-201ENST00000634283 177 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.19-201ENST00000362462 99 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.515-201ENST00000384535 112 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 RNU1-89P-201ENST00000384592 164 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.533-201ENST00000384596 114 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 RNA5SP229-201ENST00000410809 99 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC007098.1-201ENST00000420122 367 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 HMGN2P21-201ENST00000447764 270 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 HMGN2P13-201ENST00000476476 274 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-911P-201ENST00000516523 104 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC002545.1-201ENST00000592511 181 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 RAC1P9-201ENST00000604990 392 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC006023.2-201ENST00000609916 167 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 MIR1244-1-201ENST00000612829 85 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 MIR1244-3-201ENST00000635744 85 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 MIR1244-2-201ENST00000636449 85 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 MIR1244-4-202ENST00000636813 85 ntBASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USHBP1Q8N6Y0 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.26-201ENST00000362539 101 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-173P-201ENST00000364215 104 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-1317P-201ENST00000364582 104 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-806P-201ENST00000365147 105 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 SNORA54-201ENST00000384281 123 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.500-201ENST00000384466 111 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 U3.42-201ENST00000408746 214 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 SUMO1P3-201ENST00000439961 304 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 RPL39P38-201ENST00000467018 153 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-897P-201ENST00000517135 105 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 MIR4738-201ENST00000579134 87 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 AL158827.2-201ENST00000602494 330 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 AC008962.1-201ENST00000605729 304 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 AL691447.3-201ENST00000635020 330 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 ZNF299P-201ENST00000406845 1804 ntBASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USHBP1Q8N6Y0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC010733.2-201ENST00000589496 5702 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 DEFB108F-201ENST00000344638 222 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-37P-201ENST00000362692 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-11P-201ENST00000364234 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-7-201ENST00000364784 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-8-201ENST00000365467 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-25P-201ENST00000383873 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-1-201ENST00000383898 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-209P-201ENST00000384118 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-48P-201ENST00000384161 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-36P-201ENST00000384172 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-4P-201ENST00000384205 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-5P-201ENST00000384238 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-3P-201ENST00000384314 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-16P-201ENST00000384385 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-15P-201ENST00000384534 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-2-201ENST00000384627 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-29P-201ENST00000384637 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.562-201ENST00000384695 113 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-9-201ENST00000384776 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-33P-201ENST00000384793 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 SNORA69.1-201ENST00000390904 137 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-700P-201ENST00000391043 107 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-1025P-201ENST00000410629 104 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 RNU2-38P-201ENST00000410856 79 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC244098.2-201ENST00000422068 99 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 EIF4EP2-201ENST00000422816 654 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC092423.1-201ENST00000430165 186 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MLLT10P2-201ENST00000506434 249 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 MTND1P19-201ENST00000511780 315 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AC007375.1-201ENST00000554513 578 ntBASIC4.26□□□□□ -1.73
USHBP1Q8N6Y0 AL360157.1-201ENST00000565962 87 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms