Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 CYP2C61P-201ENST00000604072 290 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AC136601.2-201ENST00000604356 474 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AL627309.6-201ENST00000606857 840 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 AL031601.2-202ENST00000622650 282 ntBASIC3.53□□□□□ -1.84
VPS53Q5VIR6 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
VPS53Q5VIR6 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AL359693.1-201ENST00000614959 2407 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.33-201ENST00000362591 102 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.128-201ENST00000363391 112 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.245-201ENST00000364493 95 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 RPL7P37-201ENST00000425095 738 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AC091179.1-201ENST00000461606 579 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AC022493.1-201ENST00000492984 337 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 MTND3P25-201ENST00000509243 135 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AC005741.1-201ENST00000511094 432 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AC020661.2-201ENST00000560114 134 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 MIR5690-201ENST00000583739 73 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AC124303.1-201ENST00000605703 360 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 PART1_1.1-201ENST00000611761 217 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 RMST_4.1-201ENST00000616886 107 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 AC010378.1-201ENST00000619270 362 ntBASIC3.52□□□□□ -1.85
VPS53Q5VIR6 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS53Q5VIR6 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RNU6-1188P-201ENST00000363795 107 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 SNORA51.4-201ENST00000364993 124 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RNU6-214P-201ENST00000384130 107 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RNU6-692P-201ENST00000384496 107 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RNU6-601P-201ENST00000384540 107 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RNU2-3P-201ENST00000410144 191 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 Z92545.1-201ENST00000411782 234 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 GPM6BP2-201ENST00000432046 144 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RPS29P6-201ENST00000438196 145 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 GPM6BP1-201ENST00000446387 144 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RNU7-23P-201ENST00000459465 62 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC130509.1-201ENST00000464158 433 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 RPS29P2-201ENST00000479278 136 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC022080.3-201ENST00000544433 482 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC026371.1-201ENST00000551867 419 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AL160281.1-201ENST00000605307 311 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AC080078.3-201ENST00000605407 463 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 FTX_3.1-201ENST00000610451 147 ntBASIC3.51□□□□□ -1.85
VPS53Q5VIR6 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS53Q5VIR6 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 FTLP6-201ENST00000355274 422 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.187-201ENST00000363918 113 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 RNU6-1179P-201ENST00000384667 107 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 MIR548P-201ENST00000408336 84 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 RN7SKP58-201ENST00000411010 305 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 CYCSP33-201ENST00000414485 327 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AL714022.1-201ENST00000439897 151 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 BRK1P2-201ENST00000442875 223 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AC027575.1-201ENST00000481064 460 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 RNU6-1016P-201ENST00000516689 94 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AL033523.1-201ENST00000605153 153 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 AL080274.1-201ENST00000605565 220 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.5□□□□□ -1.85
VPS53Q5VIR6 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS53Q5VIR6 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC008669.1-201ENST00000565823 2178 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 RNU1-105P-201ENST00000363470 161 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.395-201ENST00000383945 109 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 RNU6-95P-201ENST00000384697 107 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 UBA52P6-201ENST00000399822 382 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 RNU6-1025P-201ENST00000410629 104 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 UBE2V1P4-201ENST00000425374 344 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 MYL8P-204ENST00000431574 518 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AL645568.3-201ENST00000433683 316 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 ELOCP24-201ENST00000456370 334 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 142.7 ms