Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC079140.2-201ENST00000506193 142 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 PTP4A1P4-201ENST00000512479 322 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 RNU6-1102P-201ENST00000516149 96 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 RNA5SP330-201ENST00000517096 96 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD3Q12873 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.77□□□□□ -2.29
CHD3Q12873 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.77□□□□□ -2.29
CHD3Q12873 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.77□□□□□ -2.29
CHD3Q12873 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
CHD3Q12873 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CHD3Q12873 RNU5E-1-201ENST00000362477 120 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 Y_RNA.115-201ENST00000363272 98 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 RNU6-289P-201ENST00000364093 107 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC0.77□□□□□ -2.29
CHD3Q12873 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD3Q12873 AC104806.1-201ENST00000508720 308 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 RNY4P37-201ENST00000516225 96 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 SNORA48.11-201ENST00000517015 89 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.77□□□□□ -2.29
CHD3Q12873 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD3Q12873 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD3Q12873 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.77□□□□□ -2.29
CHD3Q12873 AL133153.1-201ENST00000557756 303 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.77□□□□□ -2.29
CHD3Q12873 FAM71BP1-201ENST00000604431 523 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AL355472.4-201ENST00000610233 626 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AC009269.6-201ENST00000621778 588 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AC017037.3-201ENST00000625016 472 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.77□□□□□ -2.29
CHD3Q12873 SNORA22-201ENST00000383907 134 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 U6.112-201ENST00000384129 70 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RNU6-658P-201ENST00000384606 106 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 SNORA22C-201ENST00000384614 134 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.76□□□□□ -2.29
CHD3Q12873 GTF2IP3-201ENST00000433887 494 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.76□□□□□ -2.29
CHD3Q12873 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD3Q12873 FCF1P6-201ENST00000456841 595 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AP001324.2-201ENST00000461163 319 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 MTND2P33-201ENST00000506452 1031 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 DEFB108A-201ENST00000530110 222 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD3Q12873 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.76□□□□□ -2.29
CHD3Q12873 ZNF971P-201ENST00000562068 1249 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 MIR4293-201ENST00000584305 78 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 MIR6513-201ENST00000621188 64 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AC022513.1-201ENST00000624512 117 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 CDR1-202ENST00000625883 1485 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 Y_RNA.68-201ENST00000362881 102 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RNU6-207P-201ENST00000384137 107 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 MIR618-201ENST00000385287 98 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RNU6-733P-201ENST00000410759 104 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RAC1P6-201ENST00000423911 575 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RSL24D1P8-201ENST00000434442 492 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 JTBP1-201ENST00000441314 247 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 MTND5P14-201ENST00000441481 1267 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 PTENP1-201ENST00000447117 1215 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 MTND2P3-201ENST00000452458 470 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RNA5SP216-201ENST00000516111 123 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 RNU6-1315P-201ENST00000517187 99 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AC036111.3-201ENST00000526389 112 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD3Q12873 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD3Q12873 AC060771.1-201ENST00000582031 164 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.76□□□□□ -2.29
CHD3Q12873 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.76□□□□□ -2.29
CHD3Q12873 AP001542.1-201ENST00000591314 200 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 CLIC4P2-201ENST00000601934 717 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AL022345.1-201ENST00000607292 135 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.76□□□□□ -2.29
CHD3Q12873 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.76□□□□□ -2.29
CHD3Q12873 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.75□□□□□ -2.29
CHD3Q12873 MIR26B-201ENST00000362251 77 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 RNU6-1187P-201ENST00000364771 110 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 RNU6-546P-201ENST00000383991 107 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 RNU6-278P-201ENST00000390945 109 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AC119751.3-201ENST00000399720 670 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.75□□□□□ -2.29
CHD3Q12873 CST2P1-201ENST00000425770 87 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AL627311.1-201ENST00000431514 115 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.75□□□□□ -2.29
CHD3Q12873 RPS15AP9-201ENST00000439856 381 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AL022238.1-201ENST00000442557 355 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 FABP5P15-201ENST00000453566 214 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 RPS23P4-201ENST00000487908 423 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.75□□□□□ -2.29
CHD3Q12873 AC103851.1-201ENST00000506833 274 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AC009646.1-201ENST00000510455 318 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 MTCO3P27-201ENST00000514397 196 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 CYCSP23-201ENST00000519781 313 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.75□□□□□ -2.29
CHD3Q12873 BNIP3P30-201ENST00000601184 574 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 AC004987.4-201ENST00000603383 338 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.75□□□□□ -2.29
CHD3Q12873 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
CHD3Q12873 MIR6835-201ENST00000621552 64 ntBASIC0.75□□□□□ -2.29
CHD3Q12873 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms