Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EBAG9P1-201ENST00000418955 543 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 MTCO2P1-201ENST00000424648 477 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 CBX3P6-201ENST00000430257 527 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AC012308.1-201ENST00000451232 178 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC0.6□□□□□ -2.31
FOXA3P55318 RPF2P2-201ENST00000504693 896 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 SCARNA16.2-201ENST00000516520 172 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 RNU6-143P-201ENST00000516942 93 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.6□□□□□ -2.31
FOXA3P55318 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.6□□□□□ -2.31
FOXA3P55318 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.6□□□□□ -2.31
FOXA3P55318 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.6□□□□□ -2.31
FOXA3P55318 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
FOXA3P55318 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.6□□□□□ -2.31
FOXA3P55318 AP003465.2-201ENST00000602571 373 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AC112220.2-201ENST00000605513 533 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC0.6□□□□□ -2.31
FOXA3P55318 MIR6857-201ENST00000613267 93 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AC092656.1-203ENST00000624134 423 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AC009033.1-201ENST00000624279 431 ntBASIC0.6□□□□□ -2.31
FOXA3P55318 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.6□□□□□ -2.31
FOXA3P55318 Y_RNA.140-201ENST00000363474 103 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.59□□□□□ -2.31
FOXA3P55318 MIR100-201ENST00000385259 80 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 SNORA40C-201ENST00000391285 128 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 USP9YP33-201ENST00000412220 421 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 RPL21P111-201ENST00000418453 477 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 ZNF736P7Y-201ENST00000425158 820 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.59□□□□□ -2.31
FOXA3P55318 AL365400.1-201ENST00000431854 640 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 RSL24D1P8-201ENST00000434442 492 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 MTND4P25-201ENST00000441039 533 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 KATNBL1P3-201ENST00000443475 909 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 AC132479.1-201ENST00000449160 144 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 RNU1-131P-201ENST00000458943 161 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.59□□□□□ -2.31
FOXA3P55318 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.59□□□□□ -2.31
FOXA3P55318 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 ARL2BPP4-201ENST00000506854 471 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 AL512310.8-201ENST00000550183 120 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 AC137800.2-201ENST00000574375 120 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 RPL21P136-201ENST00000605378 396 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA3P55318 MIR1248-201ENST00000629190 106 ntBASIC0.59□□□□□ -2.31
FOXA3P55318 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
FOXA3P55318 AC008163.1-202ENST00000636004 2889 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6-853P-201ENST00000364306 107 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6-701P-201ENST00000384059 107 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6-14P-201ENST00000384630 106 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 MTND3P20-201ENST00000407663 186 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AC006461.1-201ENST00000412637 326 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 UBE2V1P10-201ENST00000414685 269 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 MRPS36P1-201ENST00000421291 307 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AL606490.4-201ENST00000423117 127 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RAC1P6-201ENST00000423911 575 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
FOXA3P55318 HSPE1P9-201ENST00000440046 311 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA3P55318 SNRPFP4-201ENST00000456366 242 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6-333P-201ENST00000459117 107 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AC134050.1-201ENST00000495088 933 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6-1092P-201ENST00000516955 87 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 RNU6-334P-201ENST00000517072 102 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AC104417.1-201ENST00000523974 751 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA3P55318 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA3P55318 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA3P55318 MIR5094-201ENST00000578766 85 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AP001542.1-201ENST00000591314 200 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AP000942.3-201ENST00000603702 160 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 BNIP3P9-201ENST00000603714 553 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 MZT1P2-201ENST00000604387 248 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AC008945.2-201ENST00000606056 604 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA3P55318 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AL589994.2-201ENST00000621124 579 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 AP000676.3-201ENST00000623299 569 ntBASIC0.58□□□□□ -2.32
FOXA3P55318 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
FOXA3P55318 RNU6-468P-201ENST00000384003 109 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 RNU6-622P-201ENST00000384272 103 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 MIR520A-201ENST00000384862 85 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 RNU2-23P-201ENST00000410545 195 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 RPS15AP12-201ENST00000419498 388 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.57□□□□□ -2.32
FOXA3P55318 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC0.57□□□□□ -2.32
FOXA3P55318 SNX2P2-201ENST00000424553 323 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.57□□□□□ -2.32
FOXA3P55318 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.57□□□□□ -2.32
FOXA3P55318 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.57□□□□□ -2.32
FOXA3P55318 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.57□□□□□ -2.32
FOXA3P55318 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.57□□□□□ -2.32
FOXA3P55318 MTCYBP42-201ENST00000444653 1130 ntBASIC0.57□□□□□ -2.32
FOXA3P55318 AC003071.1-201ENST00000451219 789 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms