Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.61□□□□□ -1.99
HNF4AP41235 MIR5583-1-201ENST00000580941 59 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 MIR4424-201ENST00000585257 86 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.61□□□□□ -1.99
HNF4AP41235 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.61□□□□□ -1.99
HNF4AP41235 AL049779.4-201ENST00000604500 156 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 AL033523.1-201ENST00000605153 153 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 AL670379.4-201ENST00000605279 254 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 MIR7106-201ENST00000612419 65 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.61□□□□□ -1.99
HNF4AP41235 AC092794.2-201ENST00000620933 563 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.61□□□□□ -1.99
HNF4AP41235 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HNF4AP41235 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
HNF4AP41235 Z82195.2-201ENST00000612348 18351 ntBASIC2.61□□□□□ -1.99
HNF4AP41235 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.6□□□□□ -1.99
HNF4AP41235 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HNF4AP41235 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.6□□□□□ -1.99
HNF4AP41235 Y_RNA.33-201ENST00000362591 102 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 SNORA72.1-201ENST00000363485 129 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 RNU6-898P-201ENST00000365627 104 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 RNU6-116P-201ENST00000384042 109 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 RNU6-38P-201ENST00000384085 107 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HNF4AP41235 SNORA40C-201ENST00000391285 128 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AL356776.1-201ENST00000406574 447 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 OR6C66P-201ENST00000414917 930 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC105272.1-201ENST00000438604 198 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC107083.1-201ENST00000439643 279 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 CALM1P1-201ENST00000442082 433 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 MRPL50P4-201ENST00000446432 475 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 RNU6-333P-201ENST00000459117 107 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 RPL36AP48-201ENST00000485521 314 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC096576.1-201ENST00000489014 359 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 MTCO2P30-201ENST00000503662 364 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 TBCAP3-201ENST00000512475 312 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.6□□□□□ -1.99
HNF4AP41235 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HNF4AP41235 ADI1P3-201ENST00000549509 470 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 GTF3AP2-201ENST00000557014 266 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 MIR1273C-201ENST00000578669 77 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AL356575.1-201ENST00000603008 283 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC245884.12-201ENST00000615364 59 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 AC006504.8-201ENST00000621046 635 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 OR4G1P-203ENST00000641984 1631 ntBASIC2.6□□□□□ -1.99
HNF4AP41235 Z75746.1-201ENST00000440243 2080 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HNF4AP41235 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.59□□□□□ -1.99
HNF4AP41235 Y_RNA.86-201ENST00000363020 111 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 Y_RNA.160-201ENST00000363677 92 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 RNU6-395P-201ENST00000365662 106 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 MIR9-1-201ENST00000385198 89 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 SNORD37.1-201ENST00000390968 65 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 CISD1P1-201ENST00000393907 327 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 RNU6-387P-201ENST00000411331 105 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.59□□□□□ -1.99
HNF4AP41235 SRIP2-201ENST00000428470 166 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 CALM2P2-201ENST00000428512 440 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.59□□□□□ -1.99
HNF4AP41235 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 AC011753.1-201ENST00000451001 220 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.59□□□□□ -1.99
HNF4AP41235 SNRPFP3-201ENST00000457792 225 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 RPL38P4-201ENST00000502376 214 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 CCDC34P1-201ENST00000507441 517 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 HMGB3P3-201ENST00000510526 400 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 RNU4-29P-201ENST00000515943 174 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 RANP3-201ENST00000530970 276 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 AL118558.2-201ENST00000556294 238 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.59□□□□□ -1.99
HNF4AP41235 RNU6-89P-201ENST00000606519 100 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 MIR15A-201ENST00000607334 83 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 U6.42-201ENST00000618440 107 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 uc_338.11-201ENST00000619132 160 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 HSPA8P4-201ENST00000511877 1920 ntBASIC2.59□□□□□ -1.99
HNF4AP41235 ZNF271P-202ENST00000465539 1970 ntBASIC2.59□□□□□ -2
HNF4AP41235 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.58□□□□□ -2
HNF4AP41235 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.58□□□□□ -2
HNF4AP41235 SNORA80A-201ENST00000363922 136 ntBASIC2.58□□□□□ -2
HNF4AP41235 RNU5E-4P-201ENST00000364931 120 ntBASIC2.58□□□□□ -2
HNF4AP41235 RNU4-66P-201ENST00000365199 138 ntBASIC2.58□□□□□ -2
HNF4AP41235 RNU1-100P-201ENST00000365255 165 ntBASIC2.58□□□□□ -2
HNF4AP41235 SNORA4.3-201ENST00000365564 137 ntBASIC2.58□□□□□ -2
HNF4AP41235 MIR514A2-201ENST00000385131 88 ntBASIC2.58□□□□□ -2
HNF4AP41235 MIR514A3-201ENST00000385132 88 ntBASIC2.58□□□□□ -2
HNF4AP41235 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.58□□□□□ -2
HNF4AP41235 AL139039.1-201ENST00000401900 692 ntBASIC2.58□□□□□ -2
HNF4AP41235 AL606923.1-201ENST00000406616 190 ntBASIC2.58□□□□□ -2
HNF4AP41235 Y_RNA.615-201ENST00000410769 117 ntBASIC2.58□□□□□ -2
HNF4AP41235 RNA5SP111-201ENST00000411386 101 ntBASIC2.58□□□□□ -2
HNF4AP41235 AL353621.1-201ENST00000418219 243 ntBASIC2.58□□□□□ -2
HNF4AP41235 AC097463.2-201ENST00000421074 142 ntBASIC2.58□□□□□ -2
HNF4AP41235 EIF4EP4-201ENST00000424916 578 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms