Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CENPCP1-201ENST00000533085 2578 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 Y_RNA.205-201ENST00000364128 113 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 RNU6-395P-201ENST00000365662 106 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 SNORD116-20-201ENST00000384529 92 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 MIR301A-201ENST00000385261 86 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 RNA5SP390-201ENST00000410191 113 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 RNU2-23P-201ENST00000410545 195 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 MTND2P29-201ENST00000438595 412 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.63□□□□□ -2.15
BRCA1P38398 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.63□□□□□ -2.15
BRCA1P38398 UBE2V1P12-201ENST00000503954 474 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.63□□□□□ -2.15
BRCA1P38398 AP006587.4-201ENST00000526053 529 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.63□□□□□ -2.15
BRCA1P38398 MIR3118-1-201ENST00000581787 76 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 MIR98-201ENST00000606724 119 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 AC106052.1-201ENST00000608029 497 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 AL031601.2-202ENST00000622650 282 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.63□□□□□ -2.15
BRCA1P38398 Z99571.1-201ENST00000636677 394 ntBASIC1.63□□□□□ -2.15
BRCA1P38398 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC1.63□□□□□ -2.15
BRCA1P38398 AC080100.1-201ENST00000624239 5356 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 Y_RNA.18-201ENST00000362461 102 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 RNA5SP363-201ENST00000365072 115 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 MIR222-201ENST00000384992 110 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 RPL22P18-201ENST00000417197 377 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 AL512286.1-201ENST00000439244 400 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 RNU6-405P-201ENST00000516637 110 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.62□□□□□ -2.15
BRCA1P38398 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.62□□□□□ -2.15
BRCA1P38398 AC013828.2-201ENST00000532487 235 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 AC123904.2-201ENST00000548059 300 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 AC091489.2-201ENST00000566263 604 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.62□□□□□ -2.15
BRCA1P38398 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.62□□□□□ -2.15
BRCA1P38398 AC107952.2-201ENST00000606048 486 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 AC099842.1-201ENST00000619919 596 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 AC008555.8-201ENST00000623602 2168 ntBASIC1.62□□□□□ -2.15
BRCA1P38398 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.62□□□□□ -2.15
BRCA1P38398 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
BRCA1P38398 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.61□□□□□ -2.15
BRCA1P38398 MIR412-201ENST00000362142 91 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 Y_RNA.623-201ENST00000411128 95 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 HMGN1P14-201ENST00000412459 517 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.61□□□□□ -2.15
BRCA1P38398 AL365338.1-201ENST00000422282 858 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.61□□□□□ -2.15
BRCA1P38398 AL117351.1-201ENST00000438864 766 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AL606662.1-201ENST00000445763 553 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AL136380.1-201ENST00000447970 162 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 PSPHP1-201ENST00000450062 261 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.61□□□□□ -2.15
BRCA1P38398 KLF3P2-201ENST00000465138 268 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.61□□□□□ -2.15
BRCA1P38398 AC116347.2-201ENST00000514912 523 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AP003033.1-201ENST00000527244 415 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.61□□□□□ -2.15
BRCA1P38398 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.61□□□□□ -2.15
BRCA1P38398 AC084364.2-201ENST00000546924 395 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.61□□□□□ -2.15
BRCA1P38398 AC011712.1-201ENST00000588959 234 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 SNRPGP17-201ENST00000603780 214 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AC013244.3-201ENST00000605614 388 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AC097468.3-201ENST00000607956 456 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 AC007490.1-201ENST00000624321 703 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 ZNF702P-202ENST00000434269 1966 ntBASIC1.61□□□□□ -2.15
BRCA1P38398 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
BRCA1P38398 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.61□□□□□ -2.15
BRCA1P38398 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.61□□□□□ -2.15
BRCA1P38398 RNU1-133P-201ENST00000364867 167 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 MIR218-1-201ENST00000384999 110 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 RNU6-757P-201ENST00000410334 100 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 BTF3L4P1-201ENST00000413813 468 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.6□□□□□ -2.15
BRCA1P38398 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.6□□□□□ -2.15
BRCA1P38398 AC010153.1-201ENST00000432862 727 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 AC004854.1-201ENST00000440356 349 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 AL161651.1-201ENST00000440882 223 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 NDUFB1P2-201ENST00000449477 176 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 RNU6-333P-201ENST00000459117 107 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 MTND2P14-201ENST00000482139 351 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 TPT1P8-201ENST00000510120 555 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 FABP5P5-201ENST00000515537 406 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.6□□□□□ -2.15
BRCA1P38398 AP003461.1-201ENST00000528866 78 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 DUXAP5-201ENST00000529668 529 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.6□□□□□ -2.15
BRCA1P38398 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.6□□□□□ -2.15
BRCA1P38398 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.6□□□□□ -2.15
BRCA1P38398 AL450336.1-201ENST00000605180 586 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 AC091895.1-201ENST00000624494 256 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 AC095038.3-201ENST00000634439 195 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 HAUS6P2-201ENST00000433254 2404 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 SNORD114-27-201ENST00000363766 70 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 MIR29C-201ENST00000385231 88 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 SNORA40.6-201ENST00000391153 128 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 MRPL42P2-201ENST00000403169 426 ntBASIC1.6□□□□□ -2.15
BRCA1P38398 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
BRCA1P38398 AC074117.2-201ENST00000417130 397 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms