Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.73□□□□□ -1.65
RFX1P22670 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.73□□□□□ -1.65
RFX1P22670 AC010099.1-201ENST00000455434 375 ntBASIC4.73□□□□□ -1.65
RFX1P22670 RN7SL132P-201ENST00000478131 296 ntBASIC4.73□□□□□ -1.65
RFX1P22670 RNA5SP54-201ENST00000516951 92 ntBASIC4.73□□□□□ -1.65
RFX1P22670 AP006245.1-201ENST00000522549 120 ntBASIC4.73□□□□□ -1.65
RFX1P22670 AC009779.6-201ENST00000603972 165 ntBASIC4.73□□□□□ -1.65
RFX1P22670 AC073657.2-201ENST00000605661 303 ntBASIC4.73□□□□□ -1.65
RFX1P22670 AC005296.1-201ENST00000616145 209 ntBASIC4.73□□□□□ -1.65
RFX1P22670 HSPA8P1-201ENST00000425843 1833 ntBASIC4.73□□□□□ -1.65
RFX1P22670 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
RFX1P22670 AL133243.3-201ENST00000617415 3004 ntBASIC4.73□□□□□ -1.65
RFX1P22670 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
RFX1P22670 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
RFX1P22670 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
RFX1P22670 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RFX1P22670 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 MIR383-201ENST00000362257 73 ntBASIC4.72□□□□□ -1.65
RFX1P22670 RNU6-209P-201ENST00000384118 107 ntBASIC4.72□□□□□ -1.65
RFX1P22670 RNU6-748P-201ENST00000384648 107 ntBASIC4.72□□□□□ -1.65
RFX1P22670 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 WARS2P1-201ENST00000429678 537 ntBASIC4.72□□□□□ -1.65
RFX1P22670 RNU6-496P-201ENST00000516145 99 ntBASIC4.72□□□□□ -1.65
RFX1P22670 RNU6-567P-201ENST00000516746 107 ntBASIC4.72□□□□□ -1.65
RFX1P22670 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.72□□□□□ -1.65
RFX1P22670 AC006133.1-201ENST00000617106 264 ntBASIC4.72□□□□□ -1.65
RFX1P22670 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.72□□□□□ -1.65
RFX1P22670 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.72□□□□□ -1.65
RFX1P22670 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
RFX1P22670 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
RFX1P22670 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
RFX1P22670 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.71□□□□□ -1.66
RFX1P22670 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
RFX1P22670 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
RFX1P22670 RNU5F-3P-201ENST00000363767 117 ntBASIC4.71□□□□□ -1.66
RFX1P22670 U3.19-201ENST00000390893 196 ntBASIC4.71□□□□□ -1.66
RFX1P22670 SNORA11.1-201ENST00000408133 129 ntBASIC4.71□□□□□ -1.66
RFX1P22670 SNORD12B-201ENST00000410433 91 ntBASIC4.71□□□□□ -1.66
RFX1P22670 RNU2-14P-201ENST00000411053 191 ntBASIC4.71□□□□□ -1.66
RFX1P22670 AC012306.1-201ENST00000423267 114 ntBASIC4.71□□□□□ -1.66
RFX1P22670 PTGES3P4-201ENST00000426243 356 ntBASIC4.71□□□□□ -1.66
RFX1P22670 RPS15AP5-201ENST00000436276 388 ntBASIC4.71□□□□□ -1.66
RFX1P22670 HMGB1P37-201ENST00000439613 609 ntBASIC4.71□□□□□ -1.66
RFX1P22670 AL139109.1-201ENST00000455491 297 ntBASIC4.71□□□□□ -1.66
RFX1P22670 RN7SL98P-201ENST00000462271 300 ntBASIC4.71□□□□□ -1.66
RFX1P22670 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.71□□□□□ -1.66
RFX1P22670 TRAV8-5-201ENST00000537369 341 ntBASIC4.71□□□□□ -1.66
RFX1P22670 AC022080.3-201ENST00000544433 482 ntBASIC4.71□□□□□ -1.66
RFX1P22670 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.71□□□□□ -1.66
RFX1P22670 AC091152.3-201ENST00000604227 325 ntBASIC4.71□□□□□ -1.66
RFX1P22670 AL359198.2-201ENST00000611836 194 ntBASIC4.71□□□□□ -1.66
RFX1P22670 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.71□□□□□ -1.66
RFX1P22670 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
RFX1P22670 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
RFX1P22670 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.7□□□□□ -1.66
RFX1P22670 RNA5SP361-201ENST00000362686 118 ntBASIC4.7□□□□□ -1.66
RFX1P22670 SNORA36A-201ENST00000384221 132 ntBASIC4.7□□□□□ -1.66
RFX1P22670 RNU6-1145P-201ENST00000384246 107 ntBASIC4.7□□□□□ -1.66
RFX1P22670 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RFX1P22670 AL603908.1-201ENST00000406098 201 ntBASIC4.7□□□□□ -1.66
RFX1P22670 OR4C10P-201ENST00000434991 931 ntBASIC4.7□□□□□ -1.66
RFX1P22670 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.7□□□□□ -1.66
RFX1P22670 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.7□□□□□ -1.66
RFX1P22670 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.7□□□□□ -1.66
RFX1P22670 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.7□□□□□ -1.66
RFX1P22670 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.7□□□□□ -1.66
RFX1P22670 IGLV3-26-201ENST00000520756 302 ntBASIC4.7□□□□□ -1.66
RFX1P22670 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.7□□□□□ -1.66
RFX1P22670 CYP4A43P-201ENST00000568156 121 ntBASIC4.7□□□□□ -1.66
RFX1P22670 BX284668.6-201ENST00000606899 438 ntBASIC4.7□□□□□ -1.66
RFX1P22670 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.7□□□□□ -1.66
RFX1P22670 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RFX1P22670 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
RFX1P22670 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.7□□□□□ -1.66
RFX1P22670 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
RFX1P22670 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
RFX1P22670 Y_RNA.54-201ENST00000362766 105 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNU6-280P-201ENST00000364145 104 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNY1-201ENST00000364228 113 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNU6-198P-201ENST00000384258 104 ntBASIC4.69□□□□□ -1.66
RFX1P22670 Y_RNA.785-201ENST00000384290 109 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNU1-13P-201ENST00000384499 162 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNU6-19P-201ENST00000384718 107 ntBASIC4.69□□□□□ -1.66
RFX1P22670 MIR487A-201ENST00000385009 80 ntBASIC4.69□□□□□ -1.66
RFX1P22670 MIR329-1-201ENST00000385028 80 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNA5SP171-201ENST00000391071 115 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNA5SP317-201ENST00000410176 116 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNA5SP311-201ENST00000411290 116 ntBASIC4.69□□□□□ -1.66
RFX1P22670 AL591419.1-201ENST00000427423 339 ntBASIC4.69□□□□□ -1.66
RFX1P22670 MTND5P15-201ENST00000434246 349 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNA5SP315-201ENST00000516340 116 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNA5SP73-201ENST00000516744 108 ntBASIC4.69□□□□□ -1.66
RFX1P22670 RNA5SP312-201ENST00000517068 116 ntBASIC4.69□□□□□ -1.66
RFX1P22670 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
RFX1P22670 AC069240.1-201ENST00000548774 375 ntBASIC4.69□□□□□ -1.66
RFX1P22670 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms