Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 OR5B19P-201ENST00000531766 928 ntBASIC2.11□□□□□ -2.07
HOXC4P09017 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC4P09017 AC078814.3-201ENST00000553036 491 ntBASIC2.11□□□□□ -2.07
HOXC4P09017 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.11□□□□□ -2.07
HOXC4P09017 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC4P09017 AC024619.4-201ENST00000580924 316 ntBASIC2.11□□□□□ -2.07
HOXC4P09017 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC4P09017 AL162413.1-201ENST00000603198 110 ntBASIC2.11□□□□□ -2.07
HOXC4P09017 MTND4LP5-201ENST00000605152 292 ntBASIC2.11□□□□□ -2.07
HOXC4P09017 AL449363.1-201ENST00000617815 186 ntBASIC2.11□□□□□ -2.07
HOXC4P09017 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.11□□□□□ -2.07
HOXC4P09017 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC4P09017 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXC4P09017 FER-210ENST00000628534 558 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXC4P09017 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXC4P09017 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC4P09017 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC4P09017 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HOXC4P09017 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC4P09017 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXC4P09017 HSPE1P11-201ENST00000339579 310 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC4P09017 SNORA72.1-201ENST00000363485 129 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 SMIM11P1-201ENST00000369586 178 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 SNORA24.1-201ENST00000384401 135 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 RNU6-750P-201ENST00000390946 107 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 RNU6-876P-201ENST00000391295 104 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AL359634.1-202ENST00000404721 284 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 HMGN2P38-201ENST00000423806 265 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 MED13P1-201ENST00000428342 171 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 HMGB1P9-201ENST00000429856 646 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AL445646.1-201ENST00000431784 216 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC4P09017 MTCO3P45-201ENST00000443036 613 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 AC079781.2-201ENST00000446424 169 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXC4P09017 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 RPS29P15-201ENST00000458329 171 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 RNU6-261P-201ENST00000459506 102 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXC4P09017 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXC4P09017 SNORD27.1-201ENST00000516319 72 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 RNU2-10P-201ENST00000516375 211 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 RNU7-51P-201ENST00000516560 62 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.1□□□□□ -2.07
HOXC4P09017 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 AC011979.2-201ENST00000527568 352 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC118273.2-201ENST00000532092 465 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 AF038458.1-201ENST00000588406 262 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 DPPA3P3-201ENST00000603842 430 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC092794.2-201ENST00000620933 563 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC024940.5-201ENST00000622889 474 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 AC005609.4-201ENST00000625071 447 ntBASIC2.1□□□□□ -2.07
HOXC4P09017 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC4P09017 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.1□□□□□ -2.07
HOXC4P09017 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXC4P09017 CKAP2P1-201ENST00000555477 2049 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.09□□□□□ -2.07
HOXC4P09017 Y_RNA.70-201ENST00000362886 110 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNY3P3-201ENST00000363816 102 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU6-996P-201ENST00000365438 107 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU6-877P-201ENST00000383868 107 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU6-641P-201ENST00000384006 107 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU6-701P-201ENST00000384059 107 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 Y_RNA.481-201ENST00000384373 102 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HOXC4P09017 FGF7P8-201ENST00000402994 292 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU2-39P-201ENST00000410604 198 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU2-49P-201ENST00000410666 184 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC023141.4-201ENST00000412031 328 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HOXC4P09017 OR51A5P-201ENST00000415429 942 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.09□□□□□ -2.07
HOXC4P09017 ZNF90P2-204ENST00000419323 1075 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.09□□□□□ -2.07
HOXC4P09017 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.09□□□□□ -2.07
HOXC4P09017 OSTCP8-201ENST00000445117 448 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC073415.1-201ENST00000449240 153 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXC4P09017 AL162395.1-201ENST00000457882 422 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU7-63P-201ENST00000459054 62 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC090255.1-201ENST00000495779 349 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 MTCYBP18-201ENST00000501056 747 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC116562.3-201ENST00000506136 177 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 SCARNA17.1-201ENST00000516211 143 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RNU6-390P-201ENST00000516259 103 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 SCARNA17.2-201ENST00000516334 143 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 SNORA20.3-201ENST00000516880 132 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXC4P09017 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXC4P09017 AC068587.5-201ENST00000528506 175 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 AP005435.4-201ENST00000529514 284 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 RANP3-201ENST00000530970 276 ntBASIC2.09□□□□□ -2.07
HOXC4P09017 OR5AL2P-201ENST00000532185 920 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms