Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC087241.2-201ENST00000535801 324 ntBASIC2.19□□□□□ -2.06
SDC3O75056 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC3O75056 SNRPGP18-201ENST00000553000 214 ntBASIC2.19□□□□□ -2.06
SDC3O75056 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC3O75056 AC006362.1-201ENST00000567392 174 ntBASIC2.19□□□□□ -2.06
SDC3O75056 Z84480.1-201ENST00000605131 311 ntBASIC2.19□□□□□ -2.06
SDC3O75056 AL138963.2-201ENST00000605137 226 ntBASIC2.19□□□□□ -2.06
SDC3O75056 RN7SKP299-201ENST00000606679 301 ntBASIC2.19□□□□□ -2.06
SDC3O75056 RMST_4.1-201ENST00000616886 107 ntBASIC2.19□□□□□ -2.06
SDC3O75056 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
SDC3O75056 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.18□□□□□ -2.06
SDC3O75056 RNU6-942P-201ENST00000363002 107 ntBASIC2.18□□□□□ -2.06
SDC3O75056 RNA5SP99-201ENST00000364020 114 ntBASIC2.18□□□□□ -2.06
SDC3O75056 RNU6-1103P-201ENST00000384150 107 ntBASIC2.18□□□□□ -2.06
SDC3O75056 MIR10A-201ENST00000385043 110 ntBASIC2.18□□□□□ -2.06
SDC3O75056 RPL21P90-201ENST00000415692 466 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC3O75056 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SDC3O75056 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC3O75056 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC3O75056 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC3O75056 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC3O75056 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC3O75056 MRPL42P6-201ENST00000486397 371 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.18□□□□□ -2.06
SDC3O75056 AC104136.1-201ENST00000512969 394 ntBASIC2.18□□□□□ -2.06
SDC3O75056 RN7SKP298-201ENST00000515950 94 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AP004607.1-201ENST00000524456 203 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AC079598.5-201ENST00000547460 117 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.18□□□□□ -2.06
SDC3O75056 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC3O75056 AC025678.1-201ENST00000567861 338 ntBASIC2.18□□□□□ -2.06
SDC3O75056 DEFB122-202ENST00000569013 197 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AL355297.2-201ENST00000604792 129 ntBASIC2.18□□□□□ -2.06
SDC3O75056 MIR5739-201ENST00000619803 80 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.18□□□□□ -2.06
SDC3O75056 MIR6766-201ENST00000622641 72 ntBASIC2.18□□□□□ -2.06
SDC3O75056 AC005609.4-201ENST00000625071 447 ntBASIC2.18□□□□□ -2.06
SDC3O75056 SCARNA4-202ENST00000625402 129 ntBASIC2.18□□□□□ -2.06
SDC3O75056 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC3O75056 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC3O75056 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.18□□□□□ -2.06
SDC3O75056 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SDC3O75056 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SDC3O75056 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.17□□□□□ -2.06
SDC3O75056 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.17□□□□□ -2.06
SDC3O75056 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
SDC3O75056 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.17□□□□□ -2.06
SDC3O75056 HAUS6P2-201ENST00000433254 2404 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU6-1287P-201ENST00000362914 107 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU6-1120P-201ENST00000362988 108 ntBASIC2.17□□□□□ -2.06
SDC3O75056 OR5H15-201ENST00000383696 930 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU6-116P-201ENST00000384042 109 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU6-1029P-201ENST00000384109 107 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU6-1060P-201ENST00000384664 107 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU4-46P-201ENST00000410818 138 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC000111.3-201ENST00000433478 193 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.17□□□□□ -2.06
SDC3O75056 AC124916.1-201ENST00000444020 547 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC012308.1-201ENST00000451232 178 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AL162395.1-201ENST00000457882 422 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC068781.1-201ENST00000488231 618 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.17□□□□□ -2.06
SDC3O75056 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
SDC3O75056 RNU1-86P-201ENST00000516108 154 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNU1-107P-201ENST00000516617 154 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RNA5SP503-201ENST00000517047 117 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.17□□□□□ -2.06
SDC3O75056 CR383656.8-201ENST00000549046 145 ntBASIC2.17□□□□□ -2.06
SDC3O75056 SUB1P2-201ENST00000556401 297 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AL138976.2-201ENST00000563989 694 ntBASIC2.17□□□□□ -2.06
SDC3O75056 RPS3AP23-202ENST00000574601 686 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC007336.1-201ENST00000576365 3828 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.17□□□□□ -2.06
SDC3O75056 NBR2-204ENST00000587322 63 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC073539.2-201ENST00000597113 165 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC008945.2-201ENST00000606056 604 ntBASIC2.17□□□□□ -2.06
SDC3O75056 AC131280.1-202ENST00000624067 4211 ntBASIC2.17□□□□□ -2.06
SDC3O75056 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.16□□□□□ -2.06
SDC3O75056 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.16□□□□□ -2.06
SDC3O75056 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.16□□□□□ -2.06
SDC3O75056 RNU6-487P-201ENST00000365430 104 ntBASIC2.16□□□□□ -2.06
SDC3O75056 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SDC3O75056 DEFB108C-201ENST00000400154 252 ntBASIC2.16□□□□□ -2.06
SDC3O75056 RNU6-607P-201ENST00000411283 108 ntBASIC2.16□□□□□ -2.06
SDC3O75056 MTATP6P18-201ENST00000417994 673 ntBASIC2.16□□□□□ -2.06
SDC3O75056 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.16□□□□□ -2.06
SDC3O75056 AL356010.1-201ENST00000456364 102 ntBASIC2.16□□□□□ -2.06
SDC3O75056 MTCO2P18-201ENST00000457151 658 ntBASIC2.16□□□□□ -2.06
SDC3O75056 MED28P2-201ENST00000475771 317 ntBASIC2.16□□□□□ -2.06
SDC3O75056 AC091133.4-201ENST00000511142 308 ntBASIC2.16□□□□□ -2.06
SDC3O75056 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.16□□□□□ -2.06
SDC3O75056 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.16□□□□□ -2.06
SDC3O75056 AC009127.3-201ENST00000570531 403 ntBASIC2.16□□□□□ -2.06
SDC3O75056 MIR4703-201ENST00000577728 79 ntBASIC2.16□□□□□ -2.06
SDC3O75056 LRRC37A5P-203ENST00000580181 585 ntBASIC2.16□□□□□ -2.06
SDC3O75056 RPS15AP11-201ENST00000594193 385 ntBASIC2.16□□□□□ -2.06
SDC3O75056 AC073648.5-201ENST00000603502 305 ntBASIC2.16□□□□□ -2.06
SDC3O75056 AC025449.1-201ENST00000603896 529 ntBASIC2.16□□□□□ -2.06
SDC3O75056 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms