Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC243428.1-201ENST00000421099 264 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 HMGN2P20-201ENST00000437531 273 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.69□□□□□ -1.98
LMX1BO60663 FTH1P25-201ENST00000447665 469 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 CECR9-201ENST00000453421 199 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 RPS23P3-201ENST00000470993 430 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 RPS15AP34-201ENST00000487776 387 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 AC139453.3-201ENST00000493276 369 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.69□□□□□ -1.98
LMX1BO60663 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
LMX1BO60663 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.69□□□□□ -1.98
LMX1BO60663 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.69□□□□□ -1.98
LMX1BO60663 RNU6-120P-201ENST00000516077 103 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 RNU6-1046P-201ENST00000516538 107 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 RNA5SP384-201ENST00000516615 116 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.69□□□□□ -1.98
LMX1BO60663 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.69□□□□□ -1.98
LMX1BO60663 AC006504.6-201ENST00000590142 199 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 AC011494.1-201ENST00000596454 237 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 NUTF2P8-201ENST00000604593 363 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 AC006023.2-201ENST00000609916 167 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 ATP5A1P2-202ENST00000616464 443 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 AC091925.1-201ENST00000623204 462 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 AC018692.3-201ENST00000623929 123 ntBASIC2.69□□□□□ -1.98
LMX1BO60663 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LMX1BO60663 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LMX1BO60663 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
LMX1BO60663 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
LMX1BO60663 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
LMX1BO60663 MTND5P27-201ENST00000428871 1720 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
LMX1BO60663 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.68□□□□□ -1.98
LMX1BO60663 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
LMX1BO60663 Y_RNA.151-201ENST00000363566 112 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 Y_RNA.422-201ENST00000384054 114 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 SNORA44-201ENST00000384584 132 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 MIR301A-201ENST00000385261 86 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 SNORA75.6-201ENST00000391318 127 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 SNORA48.8-201ENST00000391324 134 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 U3.42-201ENST00000408746 214 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.68□□□□□ -1.98
LMX1BO60663 AC113618.1-201ENST00000416747 285 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 UBE2V1P4-201ENST00000425374 344 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.68□□□□□ -1.98
LMX1BO60663 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.68□□□□□ -1.98
LMX1BO60663 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.68□□□□□ -1.98
LMX1BO60663 AL160314.1-201ENST00000490836 438 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.68□□□□□ -1.98
LMX1BO60663 PTP4A1P4-201ENST00000512479 322 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 MIR892C-201ENST00000516410 77 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 Y_RNA.708-201ENST00000516950 96 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.68□□□□□ -1.98
LMX1BO60663 AC106900.2-201ENST00000604994 317 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
LMX1BO60663 AC092608.2-201ENST00000624427 218 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.68□□□□□ -1.98
LMX1BO60663 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
LMX1BO60663 AL136164.4-201ENST00000625013 2135 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 MAPK10-362ENST00000641864 4484 ntBASIC2.68□□□□□ -1.98
LMX1BO60663 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.67□□□□□ -1.98
LMX1BO60663 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LMX1BO60663 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LMX1BO60663 Y_RNA.145-201ENST00000363527 102 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 RNU6-395P-201ENST00000365662 106 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 RNU6-214P-201ENST00000384130 107 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 RNU6-331P-201ENST00000384724 107 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 RNU6-1025P-201ENST00000410629 104 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AC107083.1-201ENST00000439643 279 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AL035666.1-201ENST00000446195 348 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.67□□□□□ -1.98
LMX1BO60663 KC877373.1-201ENST00000479066 408 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.67□□□□□ -1.98
LMX1BO60663 AL135752.1-201ENST00000479477 471 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.67□□□□□ -1.98
LMX1BO60663 RNU6-976P-201ENST00000516086 111 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AC104576.1-201ENST00000524225 88 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.67□□□□□ -1.98
LMX1BO60663 H3F3AP1-201ENST00000559984 334 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 MIR3690-201ENST00000580266 75 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 MIR3124-201ENST00000582636 67 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 UBL5P2-201ENST00000583788 219 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.67□□□□□ -1.98
LMX1BO60663 AC136601.2-201ENST00000604356 474 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
LMX1BO60663 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.67□□□□□ -1.98
LMX1BO60663 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.67□□□□□ -1.98
LMX1BO60663 AC110774.1-201ENST00000623567 2018 ntBASIC2.67□□□□□ -1.98
LMX1BO60663 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.67□□□□□ -1.98
LMX1BO60663 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
LMX1BO60663 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.67□□□□□ -1.98
LMX1BO60663 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
LMX1BO60663 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
LMX1BO60663 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LMX1BO60663 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
LMX1BO60663 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LMX1BO60663 MTND4P1-201ENST00000457501 1466 ntBASIC2.66□□□□□ -1.98
LMX1BO60663 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LMX1BO60663 Y_RNA.245-201ENST00000364493 95 ntBASIC2.66□□□□□ -1.98
LMX1BO60663 SNORD14B-201ENST00000364533 90 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms