Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CBX4O00257 RNU6-700P-201ENST00000391043 107 ntBASIC3.67□□□□□ -1.82
CBX4O00257 MTHFD2P2-201ENST00000407725 247 ntBASIC3.67□□□□□ -1.82
CBX4O00257 AC074117.2-201ENST00000417130 397 ntBASIC3.67□□□□□ -1.82
CBX4O00257 AC245291.1-201ENST00000419501 328 ntBASIC3.67□□□□□ -1.82
CBX4O00257 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.67□□□□□ -1.82
CBX4O00257 AL161651.1-201ENST00000440882 223 ntBASIC3.67□□□□□ -1.82
CBX4O00257 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.67□□□□□ -1.82
CBX4O00257 RNU5F-8P-201ENST00000515941 111 ntBASIC3.67□□□□□ -1.82
CBX4O00257 SNORA70.18-201ENST00000516696 98 ntBASIC3.67□□□□□ -1.82
CBX4O00257 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CBX4O00257 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.67□□□□□ -1.82
CBX4O00257 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.67□□□□□ -1.82
CBX4O00257 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.67□□□□□ -1.82
CBX4O00257 KLKP1-201ENST00000595979 403 ntBASIC3.67□□□□□ -1.82
CBX4O00257 AC136443.5-201ENST00000603741 370 ntBASIC3.67□□□□□ -1.82
CBX4O00257 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CBX4O00257 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CBX4O00257 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
CBX4O00257 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.67□□□□□ -1.82
CBX4O00257 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CBX4O00257 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.66□□□□□ -1.82
CBX4O00257 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CBX4O00257 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CBX4O00257 SNORD50.1-201ENST00000362987 71 ntBASIC3.66□□□□□ -1.82
CBX4O00257 Y_RNA.80-201ENST00000362996 102 ntBASIC3.66□□□□□ -1.82
CBX4O00257 SNORD6-201ENST00000365444 73 ntBASIC3.66□□□□□ -1.82
CBX4O00257 MIR625-201ENST00000385047 85 ntBASIC3.66□□□□□ -1.82
CBX4O00257 AL138885.1-201ENST00000405921 675 ntBASIC3.66□□□□□ -1.82
CBX4O00257 RNU6-1156P-201ENST00000410365 100 ntBASIC3.66□□□□□ -1.82
CBX4O00257 AC007098.1-201ENST00000420122 367 ntBASIC3.66□□□□□ -1.82
CBX4O00257 MRPS18CP6-201ENST00000423587 223 ntBASIC3.66□□□□□ -1.82
CBX4O00257 MTCYBP10-201ENST00000424905 650 ntBASIC3.66□□□□□ -1.82
CBX4O00257 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.66□□□□□ -1.82
CBX4O00257 HMGN2P20-201ENST00000437531 273 ntBASIC3.66□□□□□ -1.82
CBX4O00257 AC105758.1-201ENST00000506038 399 ntBASIC3.66□□□□□ -1.82
CBX4O00257 ACA59.2-201ENST00000517061 156 ntBASIC3.66□□□□□ -1.82
CBX4O00257 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.66□□□□□ -1.82
CBX4O00257 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.66□□□□□ -1.82
CBX4O00257 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.66□□□□□ -1.82
CBX4O00257 AC004584.2-201ENST00000570407 410 ntBASIC3.66□□□□□ -1.82
CBX4O00257 MIR4680-201ENST00000580906 66 ntBASIC3.66□□□□□ -1.82
CBX4O00257 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.66□□□□□ -1.82
CBX4O00257 AL138825.1-201ENST00000618587 192 ntBASIC3.66□□□□□ -1.82
CBX4O00257 MIR3651-201ENST00000630427 90 ntBASIC3.66□□□□□ -1.82
CBX4O00257 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.66□□□□□ -1.82
CBX4O00257 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
CBX4O00257 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CBX4O00257 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CBX4O00257 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.65□□□□□ -1.82
CBX4O00257 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CBX4O00257 AC233263.6-201ENST00000631132 1963 ntBASIC3.65□□□□□ -1.82
CBX4O00257 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.65□□□□□ -1.83
CBX4O00257 RNA5SP252-201ENST00000391131 119 ntBASIC3.65□□□□□ -1.83
CBX4O00257 RNU2-23P-201ENST00000410545 195 ntBASIC3.65□□□□□ -1.83
CBX4O00257 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.65□□□□□ -1.83
CBX4O00257 DBIP2-201ENST00000419076 262 ntBASIC3.65□□□□□ -1.83
CBX4O00257 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.65□□□□□ -1.83
CBX4O00257 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.65□□□□□ -1.83
CBX4O00257 AC243964.1-201ENST00000441814 261 ntBASIC3.65□□□□□ -1.83
CBX4O00257 SNORD19.2-201ENST00000516978 73 ntBASIC3.65□□□□□ -1.83
CBX4O00257 Y_RNA.720-201ENST00000517166 92 ntBASIC3.65□□□□□ -1.83
CBX4O00257 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CBX4O00257 MIR4474-201ENST00000579189 78 ntBASIC3.65□□□□□ -1.83
CBX4O00257 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.65□□□□□ -1.83
CBX4O00257 U4.6-201ENST00000621618 127 ntBASIC3.65□□□□□ -1.83
CBX4O00257 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.65□□□□□ -1.83
CBX4O00257 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.65□□□□□ -1.83
CBX4O00257 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
CBX4O00257 HAUS6P2-201ENST00000433254 2404 ntBASIC3.65□□□□□ -1.83
CBX4O00257 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CBX4O00257 AC005592.1-201ENST00000566527 1640 ntBASIC3.65□□□□□ -1.83
CBX4O00257 AC010680.1-201ENST00000590024 3590 ntBASIC3.65□□□□□ -1.83
CBX4O00257 MAPK10-372ENST00000641954 3413 ntBASIC3.65□□□□□ -1.83
CBX4O00257 AC066616.2-201ENST00000559334 1481 ntBASIC3.65□□□□□ -1.83
CBX4O00257 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CBX4O00257 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.64□□□□□ -1.83
CBX4O00257 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CBX4O00257 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CBX4O00257 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CBX4O00257 NDUFB4P4-201ENST00000404822 243 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AC113618.1-201ENST00000416747 285 ntBASIC3.64□□□□□ -1.83
CBX4O00257 CYCSP4-201ENST00000429682 331 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.64□□□□□ -1.83
CBX4O00257 AC115115.1-201ENST00000449927 248 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AC079354.2-201ENST00000453523 154 ntBASIC3.64□□□□□ -1.83
CBX4O00257 MTND5P22-201ENST00000458380 195 ntBASIC3.64□□□□□ -1.83
CBX4O00257 RN7SKP210-201ENST00000459176 261 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AC008155.2-201ENST00000464337 397 ntBASIC3.64□□□□□ -1.83
CBX4O00257 RPL30P10-201ENST00000488148 337 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AC097462.2-201ENST00000504623 481 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.64□□□□□ -1.83
CBX4O00257 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.64□□□□□ -1.83
CBX4O00257 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.64□□□□□ -1.83
CBX4O00257 RNU6-475P-201ENST00000516073 104 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AL590705.4-201ENST00000532209 134 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.64□□□□□ -1.83
CBX4O00257 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.64□□□□□ -1.83
CBX4O00257 MIR4644-201ENST00000579929 84 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AL356157.2-201ENST00000605122 111 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms