Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 Y_RNA.142-201ENST00000363491 102 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AL360182.1-201ENST00000397433 468 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 RNA5SP390-201ENST00000410191 113 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AL030996.1-201ENST00000411430 235 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 Z99755.1-201ENST00000414048 380 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 Z98742.2-201ENST00000431564 187 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AL513043.1-201ENST00000439124 535 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 RPL36AP48-201ENST00000485521 314 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AC090897.2-201ENST00000581715 130 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 AC090617.7-201ENST00000623952 126 ntBASIC4.59□□□□□ -1.67
CCDC9Q9Y3X0 RPL9P7-201ENST00000330965 580 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 OOSP1P1-201ENST00000423265 274 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 AC093019.1-201ENST00000443135 252 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 AC107399.1-201ENST00000451226 265 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 RPL9P9-202ENST00000466501 579 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 AP001025.1-201ENST00000486139 332 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-875P-201ENST00000516488 106 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 CKS1BP7-201ENST00000522230 235 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 BRDTP1-201ENST00000605735 677 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 AC104237.2-201ENST00000612456 443 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 AC025253.1-201ENST00000613623 543 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 AC104260.1-201ENST00000616660 539 ntBASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC9Q9Y3X0 IPO8P1-201ENST00000455509 3109 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 SNORD114-19-201ENST00000363072 75 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 Y_RNA.184-201ENST00000363884 108 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AL356432.1-201ENST00000405809 419 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-325P-201ENST00000411132 105 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC074085.1-201ENST00000413598 418 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 NDUFB1P1-201ENST00000435191 180 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 MTND1P17-201ENST00000448961 204 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 RNU7-187P-201ENST00000458985 68 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 RNA5SP112-201ENST00000515937 99 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC093331.1-201ENST00000521474 169 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 AC091135.1-201ENST00000585943 307 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 U7.8-201ENST00000619968 63 ntBASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC9Q9Y3X0 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-867P-201ENST00000364956 107 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-622P-201ENST00000384272 103 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 MIR548F5-201ENST00000408421 86 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 RNU4-47P-201ENST00000410876 114 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC002075.2-201ENST00000425207 252 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 SAR1AP4-201ENST00000429225 591 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC107083.1-201ENST00000439643 279 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC112771.1-201ENST00000463581 102 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 RPS27P27-201ENST00000498779 255 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC114801.2-201ENST00000503825 781 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-507P-201ENST00000516045 100 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 Y_RNA.804-201ENST00000615262 101 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 AC241585.2-209ENST00000638217 143 ntBASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC9Q9Y3X0 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 SNORA68.1-201ENST00000364537 132 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-1317P-201ENST00000364582 104 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-790P-201ENST00000384479 105 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 MIR544A-201ENST00000384855 91 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 HLFP1-201ENST00000402375 499 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 AL513477.1-202ENST00000417061 214 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 AC007969.2-201ENST00000441891 191 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 PCMTD1P1-201ENST00000455560 355 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 MTND1P11-201ENST00000456661 876 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-612P-201ENST00000516909 102 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 RNU1-54P-201ENST00000517181 120 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms