Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 IGKV2-38-201ENST00000517443 247 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 YPEL5P3-201ENST00000547227 352 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 MIR3921-201ENST00000577308 85 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 MIR4429-201ENST00000580105 73 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 SNRPGP15-201ENST00000600149 222 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 RNA5SP108-201ENST00000605921 117 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AL773545.4-201ENST00000637262 310 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AL513478.4-201ENST00000641636 310 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 AC233981.2-201ENST00000611524 1614 ntBASIC4.9□□□□□ -1.63
CHMP3Q9Y3E7 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-1159P-201ENST00000362933 107 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 Y_RNA.286-201ENST00000364813 102 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-72P-201ENST00000384285 79 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 BTF3L4P2-201ENST00000392798 346 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 RN7SKP156-201ENST00000410308 342 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 GOT2P5-201ENST00000433995 546 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 CYCSP32-201ENST00000440548 321 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 AC009296.1-201ENST00000443146 155 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 AL451050.1-201ENST00000450126 415 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 ATP5F1P5-201ENST00000526403 760 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 MIR3158-1-201ENST00000583596 81 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 MIR92B-201ENST00000607575 96 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 CR392039.5-201ENST00000623201 510 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 AC009541.1-201ENST00000438279 2662 ntBASIC4.89□□□□□ -1.63
CHMP3Q9Y3E7 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-105P-201ENST00000363909 104 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-318P-201ENST00000384283 103 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 RNU2-68P-201ENST00000410878 191 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 AC098614.2-201ENST00000426040 255 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 RPL23AP75-201ENST00000491601 451 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 SNORA25.14-201ENST00000516481 132 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 SNORA67.7-201ENST00000516664 135 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-861P-201ENST00000516745 106 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 AC022559.1-201ENST00000520905 205 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 AP006245.1-201ENST00000522549 120 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 AC069240.1-201ENST00000548774 375 ntBASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CHMP3Q9Y3E7 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 RNA5SP124-201ENST00000362739 110 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 RNU4-9P-201ENST00000364951 139 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 SNORA3C-201ENST00000408792 125 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 RNU4-30P-201ENST00000410245 143 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-651P-201ENST00000411040 105 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AL500522.2-201ENST00000448562 343 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 snoU13.24-201ENST00000458998 104 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 RN7SL271P-201ENST00000487601 295 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 RPL30P1-201ENST00000488676 339 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 SNORA70.16-201ENST00000516390 95 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 Vault.1-201ENST00000516474 102 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AC022695.1-201ENST00000522089 237 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 CYCSP30-201ENST00000546447 172 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AC074050.1-201ENST00000563247 211 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AC099506.2-201ENST00000623074 221 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 AC241585.2-209ENST00000638217 143 ntBASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CHMP3Q9Y3E7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 NOL8P1-201ENST00000508336 3529 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-741P-201ENST00000383889 107 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-968P-201ENST00000384076 107 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 RNU6-378P-201ENST00000384324 107 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 MIR670-201ENST00000390142 98 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 SNORA57.3-201ENST00000411095 141 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 Y_RNA.626-201ENST00000411288 95 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 AL606753.1-201ENST00000427435 87 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 AC011742.1-201ENST00000431448 434 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 AC091874.1-201ENST00000511402 339 ntBASIC4.86□□□□□ -1.63
CHMP3Q9Y3E7 GNRHR2P1-201ENST00000555315 631 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms