Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC063976.3-201ENST00000426849 329 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 SNRPEP9-201ENST00000436794 238 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 TRBVA-201ENST00000498804 316 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 Y_RNA.691-201ENST00000516611 103 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 SNORA31.21-201ENST00000517180 77 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 SNORA31.26-201ENST00000517250 137 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AC025755.1-201ENST00000521306 278 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 MIR3941-201ENST00000582572 103 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 MIR4795-201ENST00000584182 89 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 MIR3672-201ENST00000584290 82 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 MIR4506-201ENST00000584693 77 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AC007938.3-201ENST00000604965 623 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AC107871.2-201ENST00000612894 502 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AL031601.2-202ENST00000622650 282 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AC090617.7-201ENST00000623952 126 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SIX4Q9UIU6 AL359693.1-201ENST00000614959 2407 ntBASIC2.87□□□□□ -1.95
SIX4Q9UIU6 RNU6-859P-201ENST00000362728 107 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RNU6-217P-201ENST00000384164 104 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 Y_RNA.474-201ENST00000384341 102 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RPS4XP3-201ENST00000398541 413 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AL512633.1-201ENST00000399931 655 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 MIR450B-201ENST00000401182 78 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RNU2-68P-201ENST00000410878 191 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RNA5SP184-201ENST00000411071 108 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RNU6-607P-201ENST00000411283 108 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AL590664.1-201ENST00000448065 339 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AL583843.1-201ENST00000456070 346 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RPL30P14-201ENST00000482744 348 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 Y_RNA.675-201ENST00000516389 149 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AC104237.2-201ENST00000612456 443 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 uc_338.15-201ENST00000615470 191 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AL138880.2-201ENST00000616214 239 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 MIR1302-1-201ENST00000637932 143 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 AL365361.1-201ENST00000566942 3481 ntBASIC2.86□□□□□ -1.95
SIX4Q9UIU6 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
SIX4Q9UIU6 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AC138393.1-203ENST00000327086 343 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNU6-384P-201ENST00000364900 104 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNU6-1027P-201ENST00000383998 107 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNU6-1013P-201ENST00000384180 107 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 Y_RNA.480-201ENST00000384364 102 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 MIR1289-1-201ENST00000408836 144 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNA5SP38-201ENST00000410750 119 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 BMS1P22-201ENST00000414726 313 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 VN1R36P-201ENST00000414936 291 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 TMEM167AP1-201ENST00000423409 219 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 Y_RNA.682-201ENST00000516457 100 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNU6-1282P-201ENST00000516735 96 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNU6-928P-201ENST00000516876 104 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 SNORA31.19-201ENST00000517079 126 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RNU6-323P-201ENST00000521915 107 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 CYCSP27-201ENST00000527643 293 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 HMGB1P14-201ENST00000557424 591 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AL355375.2-201ENST00000574825 175 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 MIR4672-201ENST00000583126 81 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 MIR4635-201ENST00000583759 79 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 AL022345.1-201ENST00000607292 135 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 RMST_4.1-201ENST00000616886 107 ntBASIC2.85□□□□□ -1.95
SIX4Q9UIU6 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SIX4Q9UIU6 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX4Q9UIU6 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms