Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AP005019.3-201ENST00000620418 560 ntBASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LIMD1Q9UGP4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 Y_RNA.81-201ENST00000362997 102 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 Y_RNA.329-201ENST00000365209 107 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 SNORA70C-201ENST00000384538 135 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 RNU1-82P-201ENST00000390851 165 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 SEPT7P4-201ENST00000437076 306 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 AL161651.1-201ENST00000440882 223 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 AL441985.1-201ENST00000457727 251 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 RN7SL604P-201ENST00000492589 296 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 RNU1-6P-201ENST00000516290 144 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 SNORA31.9-201ENST00000516429 84 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 RNU2-12P-201ENST00000517216 168 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 AL110115.1-201ENST00000614396 364 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 AC114781.5-201ENST00000615297 108 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 Y_RNA.778-201ENST00000620203 90 ntBASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LIMD1Q9UGP4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 RNU6-727P-201ENST00000363592 107 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 RNU6-324P-201ENST00000363957 106 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 RNU6-275P-201ENST00000364910 107 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AL359837.1-201ENST00000381357 287 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 RNU6-1168P-201ENST00000390831 104 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 RNU6-239P-201ENST00000390990 99 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 EBAG9P1-201ENST00000418955 543 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AL645608.4-201ENST00000423619 154 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AC005300.1-201ENST00000428401 373 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AL645939.1-201ENST00000453429 797 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AC091167.1-201ENST00000492017 396 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 SNORD19.2-201ENST00000516978 73 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AC034105.4-201ENST00000568304 277 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 MIR3609-201ENST00000582661 80 ntBASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LIMD1Q9UGP4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 TLK1P1-201ENST00000456760 2440 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RNU6-103P-201ENST00000363686 107 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RNU6-270P-201ENST00000364131 105 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RNU6-748P-201ENST00000384648 107 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 Y_RNA.586-201ENST00000391146 98 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 CBX3P9-201ENST00000402326 552 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RNU6-735P-201ENST00000410612 107 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 YPEL5P1-201ENST00000419731 367 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 Y_RNA.637-201ENST00000459424 114 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 AC006517.1-201ENST00000480485 328 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 AC006445.2-201ENST00000510061 472 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 Y_RNA.797-201ENST00000515977 94 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RN7SKP164-201ENST00000516138 266 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RN7SKP289-201ENST00000517244 295 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 AC100767.1-201ENST00000528178 123 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 CYCSP29-201ENST00000533731 318 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 SNORA74C-1-201ENST00000580726 201 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 AC025946.2-201ENST00000603398 234 ntBASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMD1Q9UGP4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
LIMD1Q9UGP4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.62
LIMD1Q9UGP4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
LIMD1Q9UGP4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
LIMD1Q9UGP4 U3.40-201ENST00000408706 208 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RN7SKP267-201ENST00000410381 285 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RNU6-710P-201ENST00000410424 105 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 PTGES3P4-201ENST00000426243 356 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RPL12P18-201ENST00000437175 325 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms