Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MTCO2P11-201ENST00000431069 680 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AL596276.1-201ENST00000434465 418 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC132479.1-201ENST00000449160 144 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC008526.1-201ENST00000509149 338 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 MTND3P25-201ENST00000509243 135 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC079140.3-201ENST00000511111 550 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 RNA5SP402-201ENST00000517148 110 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AP002963.1-201ENST00000530590 184 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AL133241.1-201ENST00000556832 487 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC027807.1-201ENST00000559921 996 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 PIGPP4-201ENST00000584447 307 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 BNIP3P30-201ENST00000601184 574 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC073648.5-201ENST00000603502 305 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC009509.4-201ENST00000619202 509 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC026585.1-201ENST00000619582 524 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 HAUS6P2-201ENST00000433254 2404 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 DEFB108C-201ENST00000400154 252 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 CDK8P2-201ENST00000415020 547 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC138623.1-201ENST00000418060 216 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AL365400.1-201ENST00000431854 640 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC096638.1-201ENST00000444678 216 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AL353705.4-201ENST00000449661 238 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC073901.1-201ENST00000462471 408 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC090515.1-201ENST00000465295 476 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AP000852.1-201ENST00000472460 573 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 RPL9P6-201ENST00000492764 598 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AF213884.2-201ENST00000510417 903 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 RN7SKP298-201ENST00000515950 94 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AP005902.1-201ENST00000521358 186 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC136619.2-201ENST00000563361 631 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 MTCYBP33-201ENST00000575007 1130 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 MIR3611-201ENST00000584484 83 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC073539.2-201ENST00000597113 165 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC025449.1-201ENST00000603896 529 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AL138963.2-201ENST00000605137 226 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC021646.1-201ENST00000605469 484 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 RMST_4.1-201ENST00000616886 107 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 MIR5739-201ENST00000619803 80 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 MIR6132-201ENST00000622083 109 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.19□□□□□ -2.06
LHX3Q9UBR4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.19□□□□□ -2.06
LHX3Q9UBR4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC080100.1-201ENST00000624239 5356 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.18□□□□□ -2.06
LHX3Q9UBR4 Y_RNA.51-201ENST00000362725 102 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 U8.2-201ENST00000363156 134 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 RNU6-487P-201ENST00000365430 104 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 SNORA70B-201ENST00000384210 135 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 RNU6-45P-201ENST00000384471 107 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 SNORD116-20-201ENST00000384529 92 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 SNORA64-201ENST00000384674 134 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AL023284.1-201ENST00000403956 276 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 RNU2-63P-201ENST00000410792 194 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 RNU6-607P-201ENST00000411283 108 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 RN7SKP192-201ENST00000411291 327 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.18□□□□□ -2.06
LHX3Q9UBR4 UBE2V1P10-201ENST00000414685 269 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 DPH3P2-201ENST00000422618 250 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 EIF4EP4-201ENST00000424916 578 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LHX3Q9UBR4 MTND1P18-201ENST00000448191 573 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AL118520.1-201ENST00000450770 291 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC117503.1-201ENST00000472241 394 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC140059.1-201ENST00000489238 361 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 CKS1BP2-201ENST00000497342 240 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC093534.1-201ENST00000504977 132 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC074344.1-201ENST00000512823 224 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 RNU6-1178P-201ENST00000516674 107 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms