Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AC024153.1-201ENST00000603103 365 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AC078938.1-201ENST00000620993 318 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 AC090617.7-201ENST00000623952 126 ntBASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC87Q9NVE4 USP8P1-201ENST00000494673 3183 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.123-201ENST00000363338 102 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 SNORA38.1-201ENST00000364172 131 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 SNORA20.1-201ENST00000364790 130 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 RNA5SP424-201ENST00000390988 115 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 RNU2-71P-201ENST00000411395 189 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AL513124.1-201ENST00000450410 614 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 RBMY2UP-201ENST00000453474 324 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 LINC01399-202ENST00000458450 244 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 RPL23AP94-201ENST00000512518 302 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AP004607.1-201ENST00000524456 203 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AL442163.3-201ENST00000554110 156 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AC090877.1-201ENST00000561418 344 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 RPL23AP78-201ENST00000599928 470 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 FTX_3.1-201ENST00000610451 147 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 MIR8057-201ENST00000620957 69 ntBASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC87Q9NVE4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC018529.3-201ENST00000624212 2254 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 RNU6-50P-201ENST00000362356 103 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 SNORA31-201ENST00000362607 130 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 RNU6-105P-201ENST00000363909 104 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 RNU6-217P-201ENST00000384164 104 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.500-201ENST00000384466 111 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC005326.1-201ENST00000429197 123 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AL512844.2-201ENST00000433990 593 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 FTH1P9-201ENST00000513251 355 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 RNA5SP468-201ENST00000516782 93 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC090281.1-201ENST00000523019 276 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 CYCSP39-201ENST00000565821 309 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC006557.5-201ENST00000603126 811 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 MIR6852-201ENST00000621699 66 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AP000553.6-201ENST00000641242 118 ntBASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC87Q9NVE4 AC010733.2-201ENST00000589496 5702 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RNU6-212P-201ENST00000362642 104 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RNU6-806P-201ENST00000365147 105 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.405-201ENST00000383979 100 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.451-201ENST00000384200 100 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.515-201ENST00000384535 112 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.524-201ENST00000384564 100 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.561-201ENST00000384694 100 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RNU6-1093P-201ENST00000391194 107 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RNU2-38P-201ENST00000410856 79 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RPL26P27-201ENST00000414397 437 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 NDUFB4P6-201ENST00000436819 366 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 AL356535.1-201ENST00000440335 398 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 TRBVB-201ENST00000477100 408 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 SNORA43.2-201ENST00000516652 128 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 RNU6-1183P-201ENST00000517054 60 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 AP004242.1-201ENST00000533701 349 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 MTND6P33-201ENST00000571794 183 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 MIR3128-201ENST00000581957 66 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 AC096772.1-201ENST00000609146 564 ntBASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CCDC87Q9NVE4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 FTLP6-201ENST00000355274 422 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.26-201ENST00000362539 101 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 RNU4-9P-201ENST00000364951 139 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 MIR493-201ENST00000385254 89 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 MIR325-201ENST00000385260 98 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 SDAD1P3-201ENST00000427380 333 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC067942.3-201ENST00000512025 362 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 RNA5SP154-201ENST00000516193 111 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 SNORA70.18-201ENST00000516696 98 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms