Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MTND1P37-201ENST00000636562 264 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 UBE2L2-201ENST00000254302 429 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 RNU6-1167P-201ENST00000363227 94 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 RNU6-512P-201ENST00000364438 103 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 SNORA4.3-201ENST00000365564 137 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 RNU2-29P-201ENST00000410423 189 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 OR6C66P-201ENST00000414917 930 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AL591212.2-201ENST00000433923 257 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 NDUFB4P6-201ENST00000436819 366 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AC018634.1-201ENST00000437554 401 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 MTCO3P18-201ENST00000440206 761 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 MTND4P25-201ENST00000441039 533 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 FABP5P13-201ENST00000452144 328 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 HMGN2P26-201ENST00000463169 339 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AC108210.2-201ENST00000503681 201 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 RNU6-991P-201ENST00000516168 107 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 SNORA20.3-201ENST00000516880 132 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AF235103.2-201ENST00000525753 346 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AC174048.1-201ENST00000603389 144 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AL138880.2-201ENST00000616214 239 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AC006504.8-201ENST00000621046 635 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 TPTE2P4-201ENST00000258589 1605 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 OR4G1P-203ENST00000641984 1631 ntBASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.6□□□□□ -1.99
UPF3AQ9H1J1 AC008568.2-201ENST00000623862 2313 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 MIR6073-201ENST00000352083 89 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 SNORA25.6-201ENST00000364121 118 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU6-522P-201ENST00000364497 107 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU6-116P-201ENST00000384042 109 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 SNORA75B-201ENST00000384053 137 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU6-1127P-201ENST00000384580 107 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 MIR325-201ENST00000385260 98 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL356057.2-201ENST00000403318 432 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL162578.1-201ENST00000406202 378 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL356776.1-201ENST00000406574 447 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU2-33P-201ENST00000410344 192 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU2-25P-201ENST00000411041 191 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 BTF3L4P3-201ENST00000418879 476 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 TMEM167AP1-201ENST00000423409 219 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL669831.1-202ENST00000428504 417 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL592045.1-201ENST00000429867 352 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL603825.1-201ENST00000438481 80 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 GTF2IP13-201ENST00000438487 386 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 FABP5P15-201ENST00000453566 214 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RPL38P4-201ENST00000502376 214 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC008716.1-201ENST00000511084 513 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU6-1038P-201ENST00000516516 104 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU6-914P-201ENST00000516749 109 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 SNORD60.2-201ENST00000516883 86 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 RNU6-677P-201ENST00000516914 101 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC002545.1-201ENST00000592511 181 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AL158032.1-201ENST00000605401 106 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC025754.2-201ENST00000606491 432 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 AC092794.2-201ENST00000620933 563 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 U6.114-201ENST00000636407 96 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.59□□□□□ -1.99
UPF3AQ9H1J1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.59□□□□□ -2
UPF3AQ9H1J1 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -2
UPF3AQ9H1J1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 NACAP2-201ENST00000318548 624 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RNU6-1287P-201ENST00000362914 107 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RNU6-1060P-201ENST00000384664 107 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RNU6-482P-201ENST00000391068 107 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RNU6-332P-201ENST00000391193 108 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 Y_RNA.615-201ENST00000410769 117 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RNU6-387P-201ENST00000411331 105 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AL160275.3-201ENST00000423876 471 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 CALM1P1-201ENST00000442082 433 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC104058.1-201ENST00000448028 297 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RPS15AP27-201ENST00000449183 343 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC018710.1-201ENST00000506509 158 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms