Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC022493.1-201ENST00000492984 337 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC026801.1-201ENST00000497178 464 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC009901.1-201ENST00000506703 541 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC092325.1-201ENST00000566449 554 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 MIR5092-201ENST00000583139 88 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AL645944.1-201ENST00000603857 493 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AF250324.2-201ENST00000608299 610 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 Z82243.1-201ENST00000609432 473 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC010889.1-201ENST00000566193 2666 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.77□□□□□ -1.97
ZNF541Q9H0D2 AC027514.1-201ENST00000588561 1603 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 Y_RNA.255-201ENST00000364581 97 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RNU6-715P-201ENST00000365204 103 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RNU6-45P-201ENST00000384471 107 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RNU6-393P-201ENST00000384475 107 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RNU6-19P-201ENST00000384718 107 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 MIR147B-201ENST00000390185 80 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RNU6-750P-201ENST00000390946 107 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 SNORD70.1-201ENST00000391007 85 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RPL23AP36-201ENST00000413895 458 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 CYCSP49-201ENST00000420810 319 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 PGBD4P6-201ENST00000421501 610 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 Z96811.1-201ENST00000445880 108 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 GSTA11P-201ENST00000452866 669 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC092001.1-201ENST00000453012 261 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 SCARNA18-201ENST00000459004 134 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RPL31P41-201ENST00000477967 372 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 GZMAP1-201ENST00000503054 631 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 FAM92A1P2-202ENST00000504766 877 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 MRPS36P2-201ENST00000512569 299 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC074344.1-201ENST00000512823 224 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 LRRC34P2-201ENST00000514850 553 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 RNA5SP401-201ENST00000515920 127 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC016957.1-201ENST00000534895 309 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC023043.3-201ENST00000593113 385 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC005261.5-201ENST00000596280 355 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC146944.4-201ENST00000602697 718 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC084782.3-201ENST00000612282 578 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AP001486.3-201ENST00000615334 372 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC068792.1-201ENST00000621354 417 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AL359880.1-201ENST00000621879 266 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC002064.3-201ENST00000623448 346 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC093536.2-201ENST00000565257 1406 ntBASIC2.76□□□□□ -1.97
ZNF541Q9H0D2 AC138915.1-201ENST00000565427 1685 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 RNU6-552P-201ENST00000362869 119 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 RNU1-17P-201ENST00000363022 152 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 RNU6-166P-201ENST00000384371 107 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 RNU6-434P-201ENST00000384376 107 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 MIR221-201ENST00000385135 110 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 RNU6-903P-201ENST00000391270 109 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AL627311.1-201ENST00000431514 115 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 RPS15AP28-201ENST00000435088 386 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 DNAJC19P4-201ENST00000440115 345 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 MTND3P25-201ENST00000509243 135 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 Y_RNA.704-201ENST00000516851 102 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 MTND4P7-201ENST00000523876 130 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC104383.1-201ENST00000530297 370 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC006199.1-201ENST00000548728 219 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC025678.1-201ENST00000567861 338 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC067747.1-201ENST00000608026 250 ntBASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
ZNF541Q9H0D2 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 SNORA69-201ENST00000383895 132 ntBASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 AC096649.2-201ENST00000416186 393 ntBASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.74□□□□□ -1.97
ZNF541Q9H0D2 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms