Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.57□□□□□ -1.84
NUP88Q99567 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.57□□□□□ -1.84
NUP88Q99567 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.57□□□□□ -1.84
NUP88Q99567 AK3P2-201ENST00000507976 429 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC008549.1-201ENST00000512900 643 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 RNA5SP454-201ENST00000517231 127 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC109479.2-201ENST00000517842 174 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.57□□□□□ -1.84
NUP88Q99567 AC105029.1-201ENST00000520250 669 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC245166.1-201ENST00000521012 253 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC010186.2-204ENST00000537668 439 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC007151.1-201ENST00000572774 483 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.57□□□□□ -1.84
NUP88Q99567 AP000787.2-201ENST00000604432 568 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.57□□□□□ -1.84
NUP88Q99567 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.57□□□□□ -1.84
NUP88Q99567 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 SCARNA15.3-201ENST00000626315 122 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 SCARNA4.1-201ENST00000628597 123 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 CDC27P3-201ENST00000635418 1910 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 ZNF519P1-201ENST00000449011 1626 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 MIR22-201ENST00000362190 85 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 RNU6-527P-201ENST00000363425 104 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 RNU6-1329P-201ENST00000365664 107 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NUP88Q99567 AC023141.4-201ENST00000412031 328 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.56□□□□□ -1.84
NUP88Q99567 UBE2V1P4-201ENST00000425374 344 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 RPS15AP10-201ENST00000432472 382 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 AC130509.1-201ENST00000464158 433 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 MTCO1P29-201ENST00000496868 288 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.56□□□□□ -1.84
NUP88Q99567 MTND3P22-201ENST00000510932 243 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 AC092436.3-201ENST00000511788 257 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 AC025281.1-201ENST00000567026 265 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 FGF7P1-201ENST00000582820 288 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 AC093732.2-201ENST00000607950 274 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 AL591516.1-201ENST00000611326 274 ntBASIC3.56□□□□□ -1.84
NUP88Q99567 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NUP88Q99567 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NUP88Q99567 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NUP88Q99567 RNU6-799P-201ENST00000363567 107 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 RNA5SP139-201ENST00000364340 117 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.55□□□□□ -1.84
NUP88Q99567 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
NUP88Q99567 RNU6-1027P-201ENST00000383998 107 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 SNORD116-20-201ENST00000384529 92 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 Y_RNA.529-201ENST00000384586 119 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 EI24P2-201ENST00000397776 1076 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 FTH1P15-201ENST00000406984 280 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC074085.1-201ENST00000413598 418 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.55□□□□□ -1.84
NUP88Q99567 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.55□□□□□ -1.84
NUP88Q99567 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.55□□□□□ -1.84
NUP88Q99567 AL590632.1-201ENST00000424289 371 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.55□□□□□ -1.84
NUP88Q99567 MTND4P17-201ENST00000470444 350 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC107626.1-201ENST00000471084 183 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.55□□□□□ -1.84
NUP88Q99567 MRPL42P6-201ENST00000486397 371 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC018437.1-201ENST00000492214 406 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 RPS27P27-201ENST00000498779 255 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC097462.2-201ENST00000504623 481 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 RN7SKP24-201ENST00000515888 284 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AP005639.2-201ENST00000527592 928 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.55□□□□□ -1.84
NUP88Q99567 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.55□□□□□ -1.84
NUP88Q99567 DNAJC8P1-201ENST00000554535 372 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 AC103996.1-201ENST00000555468 102 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NUP88Q99567 AC064836.2-201ENST00000609491 462 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 MIR6852-201ENST00000621699 66 ntBASIC3.55□□□□□ -1.84
NUP88Q99567 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
NUP88Q99567 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NUP88Q99567 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
NUP88Q99567 AC073325.2-201ENST00000339545 159 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 U3.6-201ENST00000363622 211 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NUP88Q99567 RNU6-933P-201ENST00000384424 107 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 RNU6-19P-201ENST00000384718 107 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 MIR147B-201ENST00000390185 80 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AL078595.1-201ENST00000404458 226 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 RNU6-293P-201ENST00000411259 106 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 RPL7P37-201ENST00000425095 738 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 RPL21P40-201ENST00000428586 483 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 RPS3AP52-201ENST00000435639 297 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC124916.1-201ENST00000444020 547 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AMD1P1-201ENST00000457220 922 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC117440.1-201ENST00000474107 571 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.54□□□□□ -1.84
NUP88Q99567 Y_RNA.675-201ENST00000516389 149 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 SNORA43.2-201ENST00000516652 128 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 RN7SKP272-201ENST00000516988 232 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 ACA59.2-201ENST00000517061 156 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.54□□□□□ -1.84
NUP88Q99567 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.54□□□□□ -1.84
NUP88Q99567 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.54□□□□□ -1.84
NUP88Q99567 AC010653.1-201ENST00000571108 881 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms