Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.61□□□□□ -1.99
USP28Q96RU2 OR4G1P-203ENST00000641984 1631 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 RNU6-38P-201ENST00000384085 107 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 RNU6-140P-201ENST00000384566 108 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 RNU6-1127P-201ENST00000384580 107 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 MIR578-201ENST00000384828 96 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AL606923.1-201ENST00000406616 190 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 RNU6-1148P-201ENST00000410992 104 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
USP28Q96RU2 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.6□□□□□ -1.99
USP28Q96RU2 AL669831.1-202ENST00000428504 417 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.6□□□□□ -1.99
USP28Q96RU2 GTF2IP13-201ENST00000438487 386 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 MTND4P18-201ENST00000447010 465 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 SNRPFP3-201ENST00000457792 225 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 RNU6-333P-201ENST00000459117 107 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC139453.3-201ENST00000493276 369 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC107222.1-201ENST00000510899 637 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 SNORA31.11-201ENST00000516528 139 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 RNU6-358P-201ENST00000516564 75 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC022634.1-201ENST00000520765 532 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 MIR4446-201ENST00000578505 67 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC060780.3-201ENST00000589464 80 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC174048.1-201ENST00000603389 144 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 DISC2.1-201ENST00000612827 205 ntBASIC2.6□□□□□ -1.99
USP28Q96RU2 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.6□□□□□ -1.99
USP28Q96RU2 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.6□□□□□ -1.99
USP28Q96RU2 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
USP28Q96RU2 SNORD3E-201ENST00000362899 217 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 RNU4-66P-201ENST00000365199 138 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 RNU6-715P-201ENST00000365204 103 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 Y_RNA.573-201ENST00000384763 105 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 MIR514A2-201ENST00000385131 88 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 MIR514A3-201ENST00000385132 88 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 SNORA16.2-201ENST00000390991 127 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 RNU6-332P-201ENST00000391193 108 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 Y_RNA.615-201ENST00000410769 117 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.59□□□□□ -1.99
USP28Q96RU2 SNRPEP10-201ENST00000420249 274 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 MTND4LP11-201ENST00000422184 280 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.59□□□□□ -1.99
USP28Q96RU2 SCARNA18-201ENST00000459004 134 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.59□□□□□ -1.99
USP28Q96RU2 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.59□□□□□ -1.99
USP28Q96RU2 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.59□□□□□ -1.99
USP28Q96RU2 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.59□□□□□ -1.99
USP28Q96RU2 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.59□□□□□ -1.99
USP28Q96RU2 BNIP3P6-201ENST00000549284 499 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.59□□□□□ -1.99
USP28Q96RU2 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.59□□□□□ -1.99
USP28Q96RU2 BNIP3P9-201ENST00000603714 553 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AC004805.2-201ENST00000605382 482 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 uc_338.34-201ENST00000617467 174 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.59□□□□□ -1.99
USP28Q96RU2 AC090617.10-201ENST00000624308 134 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AP003400.5-201ENST00000624827 617 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 AC243829.7-201ENST00000633081 225 ntBASIC2.59□□□□□ -1.99
USP28Q96RU2 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.59□□□□□ -1.99
USP28Q96RU2 AL365361.1-201ENST00000566942 3481 ntBASIC2.59□□□□□ -2
USP28Q96RU2 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.58□□□□□ -2
USP28Q96RU2 RNA5SP289-201ENST00000362332 137 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-522P-201ENST00000364497 107 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-1303P-201ENST00000364841 107 ntBASIC2.58□□□□□ -2
USP28Q96RU2 Y_RNA.378-201ENST00000365652 113 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-217P-201ENST00000384164 104 ntBASIC2.58□□□□□ -2
USP28Q96RU2 MT-TL1-201ENST00000386347 75 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-876P-201ENST00000391295 104 ntBASIC2.58□□□□□ -2
USP28Q96RU2 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AL356776.1-201ENST00000406574 447 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU4-46P-201ENST00000410818 138 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-387P-201ENST00000411331 105 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.58□□□□□ -2
USP28Q96RU2 AL139413.1-201ENST00000421309 217 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.58□□□□□ -2
USP28Q96RU2 ZNF863P-201ENST00000426746 417 ntBASIC2.58□□□□□ -2
USP28Q96RU2 GPM6BP2-201ENST00000432046 144 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.58□□□□□ -2
USP28Q96RU2 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.58□□□□□ -2
USP28Q96RU2 GPM6BP1-201ENST00000446387 144 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AL360271.2-201ENST00000447710 161 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RPL37P6-201ENST00000460682 294 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RPL31P58-201ENST00000469001 379 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RPL21P99-201ENST00000480369 423 ntBASIC2.58□□□□□ -2
USP28Q96RU2 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.58□□□□□ -2
USP28Q96RU2 AC104435.1-201ENST00000483483 166 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC022493.1-201ENST00000492984 337 ntBASIC2.58□□□□□ -2
USP28Q96RU2 GZMAP1-201ENST00000503054 631 ntBASIC2.58□□□□□ -2
USP28Q96RU2 MTCO2P30-201ENST00000503662 364 ntBASIC2.58□□□□□ -2
USP28Q96RU2 PRDX4P1-201ENST00000507189 574 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC114786.4-201ENST00000508771 728 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-1178P-201ENST00000516674 107 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms