Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 MTCO3P9-201ENST00000506989 781 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 MTND3P25-201ENST00000509243 135 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC074344.1-201ENST00000512823 224 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 RN7SKP132-201ENST00000516001 208 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 Y_RNA.687-201ENST00000516558 91 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC025678.1-201ENST00000567861 338 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AP001330.5-201ENST00000607176 411 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 AC022418.1-201ENST00000624118 445 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 Z69720.2-201ENST00000624755 279 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 MTND4P1-201ENST00000457501 1466 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 CENPCP1-201ENST00000533085 2578 ntBASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.86□□□□□ -2.11
RPUSD4Q96CM3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 MTND5P26-201ENST00000426018 1752 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AL365361.1-201ENST00000566942 3481 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 Y_RNA.1-201ENST00000352915 104 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RNU1-72P-201ENST00000362976 153 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RNU6-1042P-201ENST00000384204 107 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 Y_RNA.480-201ENST00000384364 102 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 MIR27B-201ENST00000385129 97 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RNU6-903P-201ENST00000391270 109 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RNA5SP390-201ENST00000410191 113 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RNU2-66P-201ENST00000410650 161 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RNU2-52P-201ENST00000410680 190 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 OR9R1P-201ENST00000412200 877 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AL356379.1-201ENST00000414105 126 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 NUP35P1-201ENST00000422734 947 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC002486.1-201ENST00000435098 391 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RPL36AP48-201ENST00000485521 314 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AP001025.1-201ENST00000486139 332 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 MTCYBP40-201ENST00000509390 1135 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 MTND3P5-201ENST00000512798 333 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RN7SKP24-201ENST00000515888 284 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 SNORA43.2-201ENST00000516652 128 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 RPL7P20-201ENST00000520308 745 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC135279.1-201ENST00000543493 504 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 GTF3AP2-201ENST00000557014 266 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC093788.1-201ENST00000609356 927 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC004908.3-201ENST00000610248 625 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 Z99129.1-201ENST00000612510 255 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC073534.2-201ENST00000620377 381 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 AC098657.3-201ENST00000620434 263 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 Z75746.1-201ENST00000440243 2080 ntBASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
RPUSD4Q96CM3 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU6-552P-201ENST00000362869 119 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 Y_RNA.194-201ENST00000363985 102 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 Y_RNA.296-201ENST00000364930 108 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU6-434P-201ENST00000384376 107 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU6-393P-201ENST00000384475 107 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 MIR95-201ENST00000385072 81 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 SNORD23.1-201ENST00000408212 104 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU2-9P-201ENST00000410194 145 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 BTF3L4P1-201ENST00000413813 468 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC063976.3-201ENST00000426849 329 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 snoU13.14-201ENST00000459372 104 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC104435.1-201ENST00000483483 166 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RPS3AP14-201ENST00000483907 780 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU2-69P-201ENST00000516061 100 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 SNORA40.12-201ENST00000516329 111 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 SNORA31.23-201ENST00000517219 133 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AL137161.1-201ENST00000532231 390 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC027176.1-201ENST00000560204 514 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC008752.3-201ENST00000588113 712 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC091805.2-201ENST00000603848 235 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC021646.1-201ENST00000605469 484 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AC135507.2-201ENST00000612443 309 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 U4atac.1-201ENST00000618345 95 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 AP000553.5-201ENST00000641933 54 ntBASIC1.84□□□□□ -2.11
RPUSD4Q96CM3 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.84□□□□□ -2.12
RPUSD4Q96CM3 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.83□□□□□ -2.12
RPUSD4Q96CM3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
RPUSD4Q96CM3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms