Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ZNF355P-201ENST00000427301 3216 ntBASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC54Q8NEL0 RBBP8P1-201ENST00000449447 1844 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL136360.1-201ENST00000503377 1900 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 Y_RNA.40-201ENST00000362645 93 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC068050.1-201ENST00000394891 380 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 SNORA11.4-201ENST00000408823 129 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 OR6C66P-201ENST00000414917 930 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL135786.1-201ENST00000415892 214 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 MTND1P18-201ENST00000448191 573 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 RPS29P15-201ENST00000458329 171 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 ARL2BPP4-201ENST00000506854 471 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC104806.1-201ENST00000508720 308 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC010486.3-201ENST00000511602 785 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 MIR892C-201ENST00000516410 77 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 Y_RNA.695-201ENST00000516715 107 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 RNU2-44P-201ENST00000516795 194 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 RNU6-430P-201ENST00000517078 107 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 SNORA31.23-201ENST00000517219 133 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 SNORA31.25-201ENST00000517242 134 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AP005435.4-201ENST00000529514 284 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 BNIP3P6-201ENST00000549284 499 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 ANP32BP3-201ENST00000559213 706 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC136619.2-201ENST00000563361 631 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 MIR3682-201ENST00000581338 84 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 Z84480.1-201ENST00000605131 311 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL670379.4-201ENST00000605279 254 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL160281.1-201ENST00000605307 311 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 NDUFA8P1-201ENST00000605525 367 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC087752.4-201ENST00000605911 462 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC069294.1-201ENST00000608397 350 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC006566.1-201ENST00000608943 513 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AL627230.6-201ENST00000611129 280 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC008147.4-201ENST00000617570 1204 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC078883.4-201ENST00000623218 367 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 AC243829.7-201ENST00000633081 225 ntBASIC1.82□□□□□ -2.12
CCDC54Q8NEL0 MTND5P17-201ENST00000418405 1603 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU6-116P-201ENST00000384042 109 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU6-622P-201ENST00000384272 103 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU1-148P-201ENST00000384472 162 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU6-606P-201ENST00000384721 111 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 MIR454-201ENST00000390180 115 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RN7SKP158-201ENST00000410453 326 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU4-53P-201ENST00000410828 140 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC097463.2-201ENST00000421074 142 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RPS3AP44-201ENST00000425466 790 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC016691.1-201ENST00000441321 413 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC132479.1-201ENST00000449160 144 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 C1DP4-201ENST00000455429 424 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 PMCHL2-203ENST00000457791 237 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 MED28P2-201ENST00000475771 317 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RPL36AP48-201ENST00000485521 314 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC117532.1-201ENST00000514638 323 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU6-410P-201ENST00000517006 107 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RNU2-19P-201ENST00000517288 84 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AP002453.2-201ENST00000533503 320 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AL133241.1-201ENST00000556832 487 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RSL24D1P11-201ENST00000591045 491 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AL590229.1-201ENST00000603497 542 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 RMST_4.1-201ENST00000616886 107 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC092656.1-203ENST00000624134 423 ntBASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC54Q8NEL0 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNU6-486P-201ENST00000363116 107 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNU6-529P-201ENST00000363383 104 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNY1P12-201ENST00000364251 105 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 Y_RNA.359-201ENST00000365498 102 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNU6-1032P-201ENST00000384100 107 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNU6-1029P-201ENST00000384109 107 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 Y_RNA.553-201ENST00000384670 102 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AL591034.2-201ENST00000402839 359 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 MIR1302-8-201ENST00000408342 128 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNU6-607P-201ENST00000411283 108 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNA5SP111-201ENST00000411386 101 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms