Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AL359547.2-201ENST00000615810 418 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 CENPCP1-201ENST00000533085 2578 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 HSPE1P11-201ENST00000339579 310 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-623P-201ENST00000363143 105 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 OR5H15-201ENST00000383696 930 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 Y_RNA.559-201ENST00000384686 107 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 MIR29C-201ENST00000385231 88 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AL356432.1-201ENST00000405809 419 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC137499.1-201ENST00000427602 88 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 RPL23AP6-201ENST00000446637 472 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC245102.2-201ENST00000448956 180 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AL513124.1-201ENST00000450410 614 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 USP9YP12-201ENST00000450481 570 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 HMGB1P30-201ENST00000492455 606 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC107934.1-201ENST00000522215 217 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC022878.1-201ENST00000530684 149 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 RANP3-201ENST00000530970 276 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 IMMP1LP2-201ENST00000552954 492 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC233702.2-202ENST00000562547 291 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC092325.1-201ENST00000566449 554 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 MIR3913-1-201ENST00000577744 102 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC078795.2-201ENST00000602835 1252 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 ELOCP5-201ENST00000604924 333 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AL451064.1-201ENST00000607718 471 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC093788.1-201ENST00000609356 927 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 AC103710.2-201ENST00000609912 942 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
ZNF540Q8NDQ6 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC073343.1-201ENST00000328239 651 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 U8.3-201ENST00000363321 132 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-529P-201ENST00000363383 104 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 SNORA51.11-201ENST00000384442 131 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-843P-201ENST00000384454 104 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 SNORA67.4-201ENST00000384688 142 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 MIR518A2-201ENST00000384966 87 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AL033519.2-201ENST00000403958 392 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNA5SP425-201ENST00000410336 112 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNU2-66P-201ENST00000410650 161 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNA5SP450-201ENST00000411206 102 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AL589872.1-201ENST00000426602 288 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AL356320.1-201ENST00000429616 163 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC009961.2-201ENST00000435771 251 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC104058.1-201ENST00000448028 297 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 snoU109.1-201ENST00000459339 135 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNU2-53P-201ENST00000516257 147 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RNU2-46P-201ENST00000517038 113 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC022616.6-201ENST00000520479 119 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 MTND4LP18-201ENST00000526864 291 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AL512310.1-201ENST00000548639 172 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 MTND1P15-201ENST00000579262 949 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 MIR3118-1-201ENST00000581787 76 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AC087683.1-201ENST00000591187 441 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 BNIP3P30-201ENST00000601184 574 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 AL022154.1-201ENST00000604698 785 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 NDUFA8P1-201ENST00000605525 367 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 Z99129.1-201ENST00000612510 255 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 uc_338.15-201ENST00000615470 191 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 RBBP8P1-201ENST00000449447 1844 ntBASIC2.12□□□□□ -2.07
ZNF540Q8NDQ6 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RNY4P16-201ENST00000364768 94 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RNA5SP37-201ENST00000365420 130 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RNU4-52P-201ENST00000384209 138 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 MIR676-201ENST00000390702 67 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 SNORA40.3-201ENST00000390964 122 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL359511.1-201ENST00000402970 211 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 Y_RNA.598-201ENST00000410480 95 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RNU2-16P-201ENST00000410712 136 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RNU4-53P-201ENST00000410828 140 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RPS3AP3-201ENST00000411933 242 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 HMGN2P19-201ENST00000425149 265 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC010975.2-201ENST00000427781 588 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL627311.1-201ENST00000431514 115 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms