Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC005668.1-201ENST00000571142 476 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 MIR4666A-201ENST00000580160 79 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RPL30P11-203ENST00000598995 310 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 HSPE1P19-201ENST00000603327 295 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU6-271P-201ENST00000363858 105 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC0.8□□□□□ -2.28
USP54Q70EL1 RNA5SP511-201ENST00000410487 115 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AL139421.1-201ENST00000423010 169 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 USP9YP18-201ENST00000425912 695 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
USP54Q70EL1 MTND4P6-201ENST00000438297 472 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AC244505.3-201ENST00000454598 187 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.8□□□□□ -2.28
USP54Q70EL1 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.8□□□□□ -2.28
USP54Q70EL1 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.8□□□□□ -2.28
USP54Q70EL1 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.8□□□□□ -2.28
USP54Q70EL1 AC079140.2-201ENST00000506193 142 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AK3P2-201ENST00000507976 429 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.8□□□□□ -2.28
USP54Q70EL1 AC110760.3-202ENST00000515177 371 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 RNU6-551P-201ENST00000516661 103 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.8□□□□□ -2.28
USP54Q70EL1 AC069304.2-201ENST00000605154 435 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 NDUFA8P1-201ENST00000605525 367 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AC008945.2-201ENST00000606056 604 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AC084824.4-201ENST00000620106 731 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 AC004808.1-201ENST00000627671 721 ntBASIC0.8□□□□□ -2.28
USP54Q70EL1 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
USP54Q70EL1 RNU6-1167P-201ENST00000363227 94 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 MIR146A-201ENST00000385201 99 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 AL135790.2-201ENST00000437701 267 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 RNFT1P2-201ENST00000443064 757 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 PRELID3BP1-201ENST00000457142 540 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 MEMO1P3-201ENST00000459811 302 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 RPL7P43-201ENST00000478876 753 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 AKIRIN2P1-201ENST00000505898 352 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 AC116655.1-201ENST00000508324 901 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 RAB11AP2-201ENST00000545905 639 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 AC004987.4-201ENST00000603383 338 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 AL357080.1-201ENST00000617394 239 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 AC138627.2-201ENST00000624202 601 ntBASIC0.79□□□□□ -2.28
USP54Q70EL1 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
USP54Q70EL1 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
USP54Q70EL1 RNU1-23P-201ENST00000363361 144 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
USP54Q70EL1 RNU6-611P-201ENST00000384276 104 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.78□□□□□ -2.28
USP54Q70EL1 BTF3L4P3-201ENST00000418879 476 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.78□□□□□ -2.28
USP54Q70EL1 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.78□□□□□ -2.28
USP54Q70EL1 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.78□□□□□ -2.28
USP54Q70EL1 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.78□□□□□ -2.28
USP54Q70EL1 DUXAP8-207ENST00000456786 622 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.78□□□□□ -2.28
USP54Q70EL1 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.78□□□□□ -2.28
USP54Q70EL1 MTND5P13-201ENST00000513046 1079 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 RNU6-927P-201ENST00000516199 100 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 RNA5SP404-201ENST00000517118 132 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 AC036111.3-201ENST00000526389 112 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 TRAV32-201ENST00000553993 340 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 BBIP1P1-201ENST00000602999 279 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 AC243829.6-201ENST00000612652 106 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 AC016911.1-201ENST00000613297 452 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 AC092125.1-201ENST00000562568 1995 ntBASIC0.78□□□□□ -2.28
USP54Q70EL1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
USP54Q70EL1 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.78□□□□□ -2.29
USP54Q70EL1 RNU6-529P-201ENST00000363383 104 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 ISCA1P1-201ENST00000426679 387 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 BRK1P2-201ENST00000442875 223 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 RPS20P10-201ENST00000451209 253 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.78□□□□□ -2.29
USP54Q70EL1 TMEM251P1-201ENST00000503717 318 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.78□□□□□ -2.29
USP54Q70EL1 AL132822.1-201ENST00000617063 513 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 AC123767.1-202ENST00000620407 817 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.78□□□□□ -2.29
USP54Q70EL1 AL136313.1-201ENST00000624804 202 ntBASIC0.78□□□□□ -2.29
USP54Q70EL1 VTRNA1-3-201ENST00000365645 89 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USP54Q70EL1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USP54Q70EL1 AC119751.3-201ENST00000399720 670 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 RNU2-36P-201ENST00000410361 191 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 AL353621.1-201ENST00000418219 243 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.77□□□□□ -2.29
USP54Q70EL1 GTF2IP3-201ENST00000433887 494 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 USP9YP35-201ENST00000435696 412 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.77□□□□□ -2.29
USP54Q70EL1 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.77□□□□□ -2.29
USP54Q70EL1 AC012308.1-201ENST00000451232 178 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 RPL23AP35-201ENST00000451906 501 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 RPL37P6-201ENST00000460682 294 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.77□□□□□ -2.29
USP54Q70EL1 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.77□□□□□ -2.29
USP54Q70EL1 MIR4782-201ENST00000577987 79 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.77□□□□□ -2.29
USP54Q70EL1 AL133445.2-201ENST00000611191 527 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 AL157770.1-201ENST00000623049 439 ntBASIC0.77□□□□□ -2.29
USP54Q70EL1 MIR1322-201ENST00000638013 71 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms