Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-1210P-201ENST00000363775 107 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-17P-201ENST00000384245 107 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-166P-201ENST00000384371 107 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-18P-201ENST00000384527 107 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC078974.1-201ENST00000411597 223 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RPL36AP53-201ENST00000432891 316 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AL591212.2-201ENST00000433923 257 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC012308.1-201ENST00000451232 178 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 SNORA48.11-201ENST00000517015 89 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 BNIP3P9-201ENST00000603714 553 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AL358072.1-201ENST00000604156 575 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC091152.3-201ENST00000604227 325 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC092192.1-201ENST00000633154 1018 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 ICE2P2-201ENST00000483823 2787 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 SNORA8-201ENST00000384574 139 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 MIR1197-201ENST00000408818 88 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 CYP2C59P-201ENST00000457790 269 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AC009902.1-201ENST00000519351 183 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AL157871.3-201ENST00000557231 293 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 RPL21P136-201ENST00000605378 396 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 AC211469.2-201ENST00000605461 205 ntBASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
CCDC88AQ3V6T2 CBX3P1-201ENST00000325243 554 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 RNU2-23P-201ENST00000410545 195 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 MTND4P3-201ENST00000417829 541 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AC009518.2-201ENST00000418056 731 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 RPS15AP9-201ENST00000439856 381 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AC245102.2-201ENST00000448956 180 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 PAXBP1P1-201ENST00000449315 447 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 FCF1P6-201ENST00000456841 595 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-1225P-201ENST00000516336 65 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AL136520.1-202ENST00000555494 763 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AL132657.2-201ENST00000564417 358 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 MTATP6P2-201ENST00000603319 678 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AC123767.1-202ENST00000620407 817 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 AC007792.1-201ENST00000623023 402 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 TEX21P-201ENST00000447107 1476 ntBASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC88AQ3V6T2 SNORD114-19-201ENST00000363072 75 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 SNRPEP7-201ENST00000438350 220 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 AC112492.4-201ENST00000456549 352 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 AC112198.4-201ENST00000515450 351 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 SNORA25.11-201ENST00000515935 105 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-970P-201ENST00000516312 107 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 SNORA44.1-201ENST00000517031 108 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 AC022616.8-201ENST00000533569 253 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 AC091925.1-201ENST00000623204 462 ntBASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
CCDC88AQ3V6T2 AC138393.1-203ENST00000327086 343 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 RNA5SP276-201ENST00000362580 94 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-701P-201ENST00000384059 107 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-360P-201ENST00000390944 104 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 EEF1E1P1-201ENST00000446998 430 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 BTF3P15-201ENST00000455606 336 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AC136618.2-201ENST00000575091 400 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AL078605.1-201ENST00000603529 500 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 FAM71BP1-201ENST00000604431 523 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AC090970.3-201ENST00000612566 866 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 AL159153.1-201ENST00000619688 317 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 ZNF680P1-201ENST00000436625 1469 ntBASIC1.09□□□□□ -2.24
CCDC88AQ3V6T2 HAUS6P2-201ENST00000433254 2404 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 MTND5P33-201ENST00000571250 1450 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 SNORD14B-201ENST00000364533 90 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AL953862.1-201ENST00000423016 168 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 RAC1P6-201ENST00000423911 575 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 TIMM9P1-201ENST00000436122 256 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 RPL37P6-201ENST00000460682 294 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 HMGB1P28-201ENST00000507778 552 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-1183P-201ENST00000517054 60 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms