Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RPS29P13-201ENST00000402041 169 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC236972.1-201ENST00000433225 199 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AL513043.1-201ENST00000439124 535 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 HMGN2P10-201ENST00000448085 265 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AL031274.1-201ENST00000450334 232 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 snoU13.28-201ENST00000459235 104 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 snoU109.2-201ENST00000459316 135 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 RPL9P9-202ENST00000466501 579 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC018437.1-201ENST00000492214 406 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC114801.2-201ENST00000503825 781 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC093303.1-201ENST00000514549 295 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.670-201ENST00000516255 105 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AL451007.1-201ENST00000595491 289 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC011494.1-201ENST00000596454 237 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC009314.1-201ENST00000603871 304 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC018889.1-201ENST00000605372 397 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC009229.3-201ENST00000608056 282 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 AC006111.3-201ENST00000622137 383 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-78P-201ENST00000362897 107 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-942P-201ENST00000363002 107 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 SNORA63-201ENST00000363450 132 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-898P-201ENST00000365627 104 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 EI24P2-201ENST00000397776 1076 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RNA5SP38-201ENST00000410750 119 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.646-201ENST00000410980 101 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-325P-201ENST00000411132 105 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 USP9YP30-201ENST00000430729 455 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC010099.1-201ENST00000455434 375 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RPL30P15-201ENST00000457129 321 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 SNORA31.1-201ENST00000515993 133 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 SNORA31.5-201ENST00000516190 133 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 SNORA43.2-201ENST00000516652 128 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-307P-201ENST00000516743 106 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 RN7SKP57-201ENST00000517248 293 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 ANP32BP3-201ENST00000559213 706 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC021739.1-201ENST00000559631 174 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC005899.2-201ENST00000584353 90 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 MIR4276-201ENST00000584832 70 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AL162713.1-201ENST00000604480 262 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC005046.1-201ENST00000608515 625 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC004852.3-201ENST00000614131 326 ntBASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTCHD3Q3KNS1 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RNU1-75P-201ENST00000347264 129 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.138-201ENST00000363462 102 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-933P-201ENST00000384424 107 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-306P-201ENST00000384617 107 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-1077P-201ENST00000410506 102 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 USMG5P1-201ENST00000425964 177 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AL133396.1-201ENST00000432048 687 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 CYCSP32-201ENST00000440548 321 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AC125238.1-201ENST00000448842 249 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AC006539.3-201ENST00000454258 129 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 MTCO3P10-201ENST00000455912 772 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 HMGN1P18-201ENST00000457642 277 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RNU7-23P-201ENST00000459465 62 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 U8.21-201ENST00000459536 136 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AC008571.1-201ENST00000467232 300 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RPS4XP22-201ENST00000480755 780 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RPS29P20-201ENST00000489592 171 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AC010265.1-201ENST00000513509 211 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 CR383656.8-201ENST00000549046 145 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 MTND4LP5-201ENST00000605152 292 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.812-201ENST00000610788 101 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms