Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 ZNF519P1-201ENST00000449011 1626 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 MIR22-201ENST00000362190 85 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 RNU1-100P-201ENST00000365255 165 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 SNORA18.3-201ENST00000384122 132 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 RNA5SP219-201ENST00000390940 113 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 RNU2-49P-201ENST00000410666 184 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 RNU2-52P-201ENST00000410680 190 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC245054.2-201ENST00000415639 319 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC016831.2-201ENST00000417179 352 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 BX276092.3-201ENST00000424182 230 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AL161651.1-201ENST00000440882 223 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 RPL31P58-201ENST00000469001 379 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AP000852.1-201ENST00000472460 573 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 RPS26P21-201ENST00000475397 348 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 MTCYBP18-201ENST00000501056 747 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC083906.5-201ENST00000503722 328 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 SCGB1D5P-201ENST00000515134 247 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AF235103.2-201ENST00000525753 346 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AP002770.2-201ENST00000543613 532 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AC007151.1-201ENST00000572774 483 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 BNIP3P25-201ENST00000596023 559 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 AL391813.1-201ENST00000603098 260 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 RNU6-1283P-201ENST00000365314 105 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 RNU6-332P-201ENST00000391193 108 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 EIF4E2P1-201ENST00000393781 255 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AL358075.3-201ENST00000426289 226 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC009414.1-201ENST00000427200 443 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 HIGD1AP2-201ENST00000446367 280 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AL513328.1-201ENST00000446460 224 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC006026.2-201ENST00000457376 180 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 RN7SL499P-201ENST00000481141 276 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC069439.1-201ENST00000494739 167 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC116655.1-201ENST00000508324 901 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AL117351.2-201ENST00000513571 157 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 RNU6-1038P-201ENST00000516516 104 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 RNU6-1069P-201ENST00000516612 133 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC023050.3-201ENST00000541142 333 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AL121821.2-201ENST00000556081 394 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 MIR4801-201ENST00000582704 82 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC091152.3-201ENST00000604227 325 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AP000787.2-201ENST00000604432 568 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC025754.2-201ENST00000606491 432 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC002044.1-201ENST00000606707 158 ntBASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.86□□□□□ -1.95
COL28A1Q2UY09 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 RNU6-942P-201ENST00000363002 107 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SNORD67-201ENST00000390833 111 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SNORA26.7-201ENST00000391288 122 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AL096701.2-201ENST00000416920 238 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC087499.2-201ENST00000432861 149 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 RPL21P2-201ENST00000440049 481 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SNORD109B-201ENST00000458961 67 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SNORD109A-201ENST00000459128 67 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 RPS29P12-201ENST00000460178 152 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 RAC1P5-201ENST00000512182 576 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.687-201ENST00000516558 91 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SNORA31.26-201ENST00000517250 137 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC015712.3-201ENST00000559380 164 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 SNORD53-201ENST00000579969 78 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC078899.3-201ENST00000599065 212 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.85□□□□□ -1.95
COL28A1Q2UY09 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC010378.1-201ENST00000619270 362 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms