Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC0.81□□□□□ -2.28
CHD3Q12873 AC090970.3-201ENST00000612566 866 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AL109620.1-201ENST00000618738 1197 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AC007792.1-201ENST00000623023 402 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 MIR924-201ENST00000638017 53 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.81□□□□□ -2.28
CHD3Q12873 RNU6-166P-201ENST00000384371 107 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 DHFRP6-201ENST00000401776 268 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.81□□□□□ -2.28
CHD3Q12873 DEFB108E-201ENST00000524692 240 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AC092451.2-201ENST00000538746 658 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AC122134.1-202ENST00000569111 1201 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.81□□□□□ -2.28
CHD3Q12873 AC012065.4-201ENST00000602445 679 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AC112191.3-201ENST00000604371 277 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 HSBP1P2-201ENST00000299671 229 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CHD3Q12873 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CHD3Q12873 AL139397.2-201ENST00000404529 772 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 MIR1197-201ENST00000408818 88 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 AL353718.1-201ENST00000451028 517 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 BTF3P15-201ENST00000455606 336 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 Y_RNA.681-201ENST00000516445 113 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 AC009902.1-201ENST00000519351 183 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 COPS8P3-201ENST00000526024 482 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.8□□□□□ -2.28
CHD3Q12873 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.8□□□□□ -2.28
CHD3Q12873 AC233702.2-202ENST00000562547 291 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 AC012414.6-201ENST00000568241 401 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 MIR4698-201ENST00000577795 80 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 NIFKP6-201ENST00000598115 845 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 LINC02555-201ENST00000563933 1951 ntBASIC0.8□□□□□ -2.28
CHD3Q12873 ZNF680P1-201ENST00000436625 1469 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
CHD3Q12873 RNU6-1167P-201ENST00000363227 94 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 SNORD1A-201ENST00000364968 72 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RNU6-17P-201ENST00000384245 107 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RNU6-622P-201ENST00000384272 103 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RNU6-18P-201ENST00000384527 107 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 SNORD116-20-201ENST00000384529 92 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RNU6-939P-201ENST00000384634 107 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 MIR30A-201ENST00000385092 71 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
CHD3Q12873 RPL37P10-201ENST00000412884 288 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.79□□□□□ -2.28
CHD3Q12873 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD3Q12873 TIMM9P2-201ENST00000419324 266 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AL139421.1-201ENST00000423010 169 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC004941.2-201ENST00000427009 228 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD3Q12873 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD3Q12873 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD3Q12873 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD3Q12873 SNORA31.19-201ENST00000517079 126 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RNA5SP165-201ENST00000517142 115 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC022784.5-201ENST00000522241 437 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC022861.1-201ENST00000522981 663 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC136618.2-201ENST00000575091 400 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC211469.2-201ENST00000605461 205 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC107952.2-201ENST00000606048 486 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC007742.2-201ENST00000618226 398 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.79□□□□□ -2.28
CHD3Q12873 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.79□□□□□ -2.28
CHD3Q12873 TEX21P-201ENST00000447107 1476 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 Y_RNA.408-201ENST00000383987 102 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 SNORA70.7-201ENST00000384159 133 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 EIF4EP2-201ENST00000422816 654 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RPL39P28-201ENST00000465655 155 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC021146.2-201ENST00000504736 556 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC108078.1-201ENST00000508073 725 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC093809.1-201ENST00000509155 340 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 RNU6-927P-201ENST00000516199 100 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.79□□□□□ -2.28
CHD3Q12873 AF129408.1-201ENST00000608767 431 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AL359314.1-201ENST00000616913 261 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 PCMTD1P7-201ENST00000634506 357 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AL442644.1-201ENST00000454390 3105 ntBASIC0.79□□□□□ -2.28
CHD3Q12873 AC092125.1-201ENST00000562568 1995 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
CHD3Q12873 MTND3P20-201ENST00000407663 186 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AC068533.2-201ENST00000411872 306 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 OR6C66P-201ENST00000414917 930 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AC008267.5-201ENST00000424928 265 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AL358176.2-201ENST00000425769 204 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 CBX3P6-201ENST00000430257 527 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.78□□□□□ -2.28
CHD3Q12873 RPL17P35-201ENST00000432217 549 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 RPS27P1-201ENST00000450552 247 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC0.78□□□□□ -2.28
CHD3Q12873 AC105313.1-201ENST00000509121 353 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AC022616.8-201ENST00000533569 253 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.78□□□□□ -2.28
CHD3Q12873 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.78□□□□□ -2.28
CHD3Q12873 AC008759.3-201ENST00000613300 508 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 AL079343.1-201ENST00000572358 1771 ntBASIC0.78□□□□□ -2.28
CHD3Q12873 RNU6-1284P-201ENST00000363701 100 ntBASIC0.77□□□□□ -2.29
CHD3Q12873 AL591704.2-201ENST00000421658 181 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms