Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 FAM35DP-201ENST00000323387 2712 ntBASIC3.04□□□□□ -1.92
HOXA4Q00056 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA4Q00056 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA4Q00056 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA4Q00056 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA4Q00056 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA4Q00056 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA4Q00056 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA4Q00056 RNU6-874P-201ENST00000362390 105 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 RNU6-283P-201ENST00000364788 107 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 SNORA62.3-201ENST00000365110 153 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 RNU6-700P-201ENST00000391043 107 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AL591034.1-201ENST00000407447 340 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA4Q00056 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.03□□□□□ -1.92
HOXA4Q00056 RPS3AP46-201ENST00000448352 682 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA4Q00056 AC025518.1-201ENST00000479856 347 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 RPS27AP10-201ENST00000496103 208 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC006445.2-201ENST00000510061 472 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 SNORA40.14-201ENST00000516543 86 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 RN7SKP209-201ENST00000516888 304 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC144568.1-201ENST00000520139 137 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC131281.1-201ENST00000522984 164 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AP004607.1-201ENST00000524456 203 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC040926.1-201ENST00000530195 238 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC010186.2-204ENST00000537668 439 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA4Q00056 MIR4429-201ENST00000580105 73 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 KLKP1-201ENST00000595979 403 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC006557.5-201ENST00000603126 811 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 7SK.7-201ENST00000603504 247 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC016727.2-201ENST00000603988 621 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC006077.1-201ENST00000604746 343 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 PRR13P7-201ENST00000605538 430 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 MIR6134-201ENST00000617606 109 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 AC241585.2-209ENST00000638217 143 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXA4Q00056 AC022336.2-201ENST00000568966 2538 ntBASIC3.03□□□□□ -1.92
HOXA4Q00056 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA4Q00056 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
HOXA4Q00056 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
HOXA4Q00056 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HOXA4Q00056 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA4Q00056 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 Y_RNA.210-201ENST00000364161 110 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 Y_RNA.380-201ENST00000365663 111 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 MIR1252-201ENST00000408861 65 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 ATP5A1P2-201ENST00000412323 255 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 MTCO3P29-201ENST00000432119 779 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA4Q00056 RPS3AP12-201ENST00000443616 753 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AC125238.1-201ENST00000448842 249 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 RPL37P4-201ENST00000448908 268 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA4Q00056 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 RNA5SP309-201ENST00000516670 106 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AC007458.1-201ENST00000542812 373 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA4Q00056 AL161670.1-201ENST00000554348 137 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AC004817.2-201ENST00000561794 651 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 AL451007.1-201ENST00000595491 289 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AL355297.3-201ENST00000604082 446 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 Z98751.3-201ENST00000604447 521 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 HSPE1P7-201ENST00000604681 321 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 AL021879.1-201ENST00000611756 288 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA4Q00056 CUL1P1-201ENST00000509510 2425 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 FAM35BP-202ENST00000497389 3337 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA4Q00056 MTND5P27-201ENST00000428871 1720 ntBASIC3.02□□□□□ -1.93
HOXA4Q00056 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA4Q00056 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA4Q00056 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA4Q00056 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA4Q00056 RNA5SP42-201ENST00000364278 115 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 RNU1-100P-201ENST00000365255 165 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 Y_RNA.401-201ENST00000383965 117 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 Y_RNA.405-201ENST00000383979 100 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 Y_RNA.451-201ENST00000384200 100 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 RNU6-708P-201ENST00000384217 107 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 Y_RNA.524-201ENST00000384564 100 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 Y_RNA.561-201ENST00000384694 100 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 MIR490-201ENST00000384865 128 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 MIR670-201ENST00000390142 98 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA4Q00056 MIR1302-3-201ENST00000408128 138 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 RN7SKP27-201ENST00000410684 333 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 NDUFS5P4-201ENST00000412983 318 ntBASIC3.01□□□□□ -1.93
HOXA4Q00056 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms