Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 AC016957.1-201ENST00000534895 309 ntBASIC2.33□□□□□ -2.04
TNFRSF4P43489 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 ELOCP31-201ENST00000540463 467 ntBASIC2.33□□□□□ -2.04
TNFRSF4P43489 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 MIR5571-201ENST00000577998 113 ntBASIC2.33□□□□□ -2.04
TNFRSF4P43489 AC068790.6-201ENST00000602558 258 ntBASIC2.33□□□□□ -2.04
TNFRSF4P43489 AC012507.3-201ENST00000603556 477 ntBASIC2.33□□□□□ -2.04
TNFRSF4P43489 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.33□□□□□ -2.04
TNFRSF4P43489 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
TNFRSF4P43489 SEPT14P19-203ENST00000633205 211 ntBASIC2.33□□□□□ -2.04
TNFRSF4P43489 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 Z75746.1-201ENST00000440243 2080 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 SNORD114-1-201ENST00000362705 72 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 RNU6-1120P-201ENST00000362988 108 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 VTRNA1-1-201ENST00000363120 99 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 Y_RNA.381-201ENST00000365666 102 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 RNU6-1103P-201ENST00000384150 107 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 Y_RNA.576-201ENST00000384781 102 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 MIR10A-201ENST00000385043 110 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 FTH1P15-201ENST00000406984 280 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 MTCYBP5-201ENST00000423752 1135 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 DNAJC19P4-201ENST00000440115 345 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC012308.1-201ENST00000451232 178 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 GSTA11P-201ENST00000452866 669 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AL162395.1-201ENST00000457882 422 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 RNU7-63P-201ENST00000459054 62 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 MRPL42P6-201ENST00000486397 371 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC104806.1-201ENST00000508720 308 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 RNU6-506P-201ENST00000516553 94 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 HSPE1P18-201ENST00000517602 280 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC025678.1-201ENST00000567861 338 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 MIR5692A1-201ENST00000580523 69 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 MIR4658-201ENST00000584344 65 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 RNU6-91P-201ENST00000607774 107 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 HMGB1P24-202ENST00000615653 685 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC138627.2-201ENST00000624202 601 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC124864.2-201ENST00000624736 186 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.32□□□□□ -2.04
TNFRSF4P43489 ZNF680P1-201ENST00000436625 1469 ntBASIC2.32□□□□□ -2.04
TNFRSF4P43489 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
TNFRSF4P43489 OR4G2P-201ENST00000328113 903 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 RNU6-1287P-201ENST00000362914 107 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 SNORD14B-201ENST00000364533 90 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 SNORD115-7-201ENST00000365306 82 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 RNU4-48P-201ENST00000365559 182 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 RNU6-1060P-201ENST00000384664 107 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 MIR578-201ENST00000384828 96 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 MTCO3P40-201ENST00000392516 676 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AL591416.1-201ENST00000404015 867 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 CIR1P3-201ENST00000405137 479 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AL031779.1-201ENST00000415663 330 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC097463.2-201ENST00000421074 142 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC093151.1-201ENST00000427711 313 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 RPS15AP28-201ENST00000435088 386 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC018634.1-201ENST00000437554 401 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 MTND1P34-201ENST00000438556 671 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC104058.1-201ENST00000448028 297 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC027673.1-201ENST00000456245 405 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 SRRM1P2-201ENST00000464531 1192 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC011005.2-201ENST00000487324 359 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 MTAPP1-201ENST00000489154 819 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 HMGB1P30-201ENST00000492455 606 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC107222.1-201ENST00000510899 637 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 SNORD27.1-201ENST00000516319 72 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 EIF1P4-201ENST00000572664 335 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC009163.5-201ENST00000575421 637 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC146944.4-201ENST00000602697 718 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC069234.5-201ENST00000611056 416 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC139792.3-201ENST00000623525 224 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC244517.12-201ENST00000623581 663 ntBASIC2.31□□□□□ -2.04
TNFRSF4P43489 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.31□□□□□ -2.04
TNFRSF4P43489 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.31□□□□□ -2.04
TNFRSF4P43489 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
TNFRSF4P43489 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.31□□□□□ -2.04
TNFRSF4P43489 AC007336.1-201ENST00000576365 3828 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
TNFRSF4P43489 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms