Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPL23AP78-201ENST00000599928 470 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.2□□□□□ -1.9
CIITAP33076 AC136601.2-201ENST00000604356 474 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC113139.1-201ENST00000605049 239 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC002044.1-201ENST00000606707 158 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC006386.2-201ENST00000624491 75 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC012005.1-201ENST00000624575 75 ntBASIC3.2□□□□□ -1.9
CIITAP33076 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
CIITAP33076 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.2□□□□□ -1.9
CIITAP33076 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CIITAP33076 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CIITAP33076 AC092593.1-201ENST00000515413 1815 ntBASIC3.19□□□□□ -1.9
CIITAP33076 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CIITAP33076 SNORD3E-201ENST00000362899 217 ntBASIC3.19□□□□□ -1.9
CIITAP33076 Y_RNA.245-201ENST00000364493 95 ntBASIC3.19□□□□□ -1.9
CIITAP33076 CD24P4-201ENST00000382840 243 ntBASIC3.19□□□□□ -1.9
CIITAP33076 Y_RNA.419-201ENST00000384041 102 ntBASIC3.19□□□□□ -1.9
CIITAP33076 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CIITAP33076 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.19□□□□□ -1.9
CIITAP33076 RNU6-607P-201ENST00000411283 108 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AL451074.5-201ENST00000415894 435 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.19□□□□□ -1.9
CIITAP33076 AC007919.1-201ENST00000429380 217 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.19□□□□□ -1.9
CIITAP33076 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.19□□□□□ -1.9
CIITAP33076 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.19□□□□□ -1.9
CIITAP33076 Y_RNA.632-201ENST00000459189 102 ntBASIC3.19□□□□□ -1.9
CIITAP33076 RNU7-23P-201ENST00000459465 62 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AC091826.1-201ENST00000514065 313 ntBASIC3.19□□□□□ -1.9
CIITAP33076 COPS8P3-201ENST00000526024 482 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AP005639.2-201ENST00000527592 928 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AC079600.2-201ENST00000550076 130 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AL157871.3-201ENST00000557231 293 ntBASIC3.19□□□□□ -1.9
CIITAP33076 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.19□□□□□ -1.9
CIITAP33076 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.19□□□□□ -1.9
CIITAP33076 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CIITAP33076 MIR3941-201ENST00000582572 103 ntBASIC3.19□□□□□ -1.9
CIITAP33076 ELOCP29-201ENST00000588193 334 ntBASIC3.19□□□□□ -1.9
CIITAP33076 AL137843.1-201ENST00000605078 385 ntBASIC3.19□□□□□ -1.9
CIITAP33076 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CIITAP33076 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CIITAP33076 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CIITAP33076 MTND5P19-201ENST00000424872 1794 ntBASIC3.18□□□□□ -1.9
CIITAP33076 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CIITAP33076 RNU6-384P-201ENST00000364900 104 ntBASIC3.18□□□□□ -1.9
CIITAP33076 SNORD116-11-201ENST00000383882 92 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RNU6-217P-201ENST00000384164 104 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RNU6-1013P-201ENST00000384180 107 ntBASIC3.18□□□□□ -1.9
CIITAP33076 MIR548F5-201ENST00000408421 86 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RPS20P15-201ENST00000412792 311 ntBASIC3.18□□□□□ -1.9
CIITAP33076 AL592148.1-201ENST00000413568 445 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RPL7P10-201ENST00000417407 739 ntBASIC3.18□□□□□ -1.9
CIITAP33076 ATG3P1-201ENST00000419507 911 ntBASIC3.18□□□□□ -1.9
CIITAP33076 NCOR1P3-201ENST00000420479 303 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RPL7P37-201ENST00000425095 738 ntBASIC3.18□□□□□ -1.9
CIITAP33076 SKA2P1-201ENST00000425592 390 ntBASIC3.18□□□□□ -1.9
CIITAP33076 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.18□□□□□ -1.9
CIITAP33076 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.18□□□□□ -1.9
CIITAP33076 AL513043.1-201ENST00000439124 535 ntBASIC3.18□□□□□ -1.9
CIITAP33076 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.18□□□□□ -1.9
CIITAP33076 snoU13.28-201ENST00000459235 104 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RPS15AP34-201ENST00000487776 387 ntBASIC3.18□□□□□ -1.9
CIITAP33076 AC139453.3-201ENST00000493276 369 ntBASIC3.18□□□□□ -1.9
CIITAP33076 MTCO1P29-201ENST00000496868 288 ntBASIC3.18□□□□□ -1.9
CIITAP33076 MTND5P5-201ENST00000503764 376 ntBASIC3.18□□□□□ -1.9
CIITAP33076 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.18□□□□□ -1.9
CIITAP33076 RN7SKP132-201ENST00000516001 208 ntBASIC3.18□□□□□ -1.9
CIITAP33076 RNA5SP454-201ENST00000517231 127 ntBASIC3.18□□□□□ -1.9
CIITAP33076 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.18□□□□□ -1.9
CIITAP33076 CYCSP27-201ENST00000527643 293 ntBASIC3.18□□□□□ -1.9
CIITAP33076 ANP32BP3-201ENST00000559213 706 ntBASIC3.18□□□□□ -1.9
CIITAP33076 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.18□□□□□ -1.9
CIITAP33076 AL031601.2-202ENST00000622650 282 ntBASIC3.18□□□□□ -1.9
CIITAP33076 AL359757.2-201ENST00000624309 274 ntBASIC3.18□□□□□ -1.9
CIITAP33076 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.18□□□□□ -1.9
CIITAP33076 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CIITAP33076 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CIITAP33076 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CIITAP33076 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CIITAP33076 RNU6-266P-201ENST00000364225 107 ntBASIC3.17□□□□□ -1.9
CIITAP33076 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.17□□□□□ -1.9
CIITAP33076 MIR301A-201ENST00000385261 86 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.17□□□□□ -1.9
CIITAP33076 AF228730.4-201ENST00000421457 183 ntBASIC3.17□□□□□ -1.9
CIITAP33076 GPM6BP2-201ENST00000432046 144 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AC244505.4-201ENST00000434905 287 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AC105272.1-201ENST00000438604 198 ntBASIC3.17□□□□□ -1.9
CIITAP33076 SSXP5-201ENST00000443473 287 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 GPM6BP1-201ENST00000446387 144 ntBASIC3.17□□□□□ -1.9
CIITAP33076 MTND1P17-201ENST00000448961 204 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AP001486.1-201ENST00000463339 476 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AC008716.1-201ENST00000511084 513 ntBASIC3.17□□□□□ -1.9
CIITAP33076 RNA5SP385-201ENST00000515947 110 ntBASIC3.17□□□□□ -1.9
CIITAP33076 Y_RNA.701-201ENST00000516812 110 ntBASIC3.17□□□□□ -1.9
CIITAP33076 RNU6-928P-201ENST00000516876 104 ntBASIC3.17□□□□□ -1.9
CIITAP33076 RNA5SP290-201ENST00000517133 127 ntBASIC3.17□□□□□ -1.9
CIITAP33076 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.17□□□□□ -1.9
CIITAP33076 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms