Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORD70.1-201ENST00000391007 85 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXC9P31274 SKA2P1-201ENST00000425592 390 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 AL360271.2-201ENST00000447710 161 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 NFU1P2-201ENST00000448700 469 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXC9P31274 AL583843.1-201ENST00000456070 346 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 AC022493.1-201ENST00000492984 337 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXC9P31274 AC107222.1-201ENST00000510899 637 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 HSPE1P18-201ENST00000517602 280 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 MTND4P7-201ENST00000523876 130 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXC9P31274 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXC9P31274 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXC9P31274 MIR5692A1-201ENST00000580523 69 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 AC010525.2-201ENST00000590920 195 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 AL161629.2-201ENST00000615347 275 ntBASIC2.95□□□□□ -1.94
HOXC9P31274 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXC9P31274 RNY3P3-201ENST00000363816 102 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 RNU6-371P-201ENST00000364283 108 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 RNU4-20P-201ENST00000365601 151 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 RNU6-45P-201ENST00000384471 107 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXC9P31274 RNU6-193P-201ENST00000410977 107 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC098614.2-201ENST00000426040 255 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXC9P31274 AL121601.2-201ENST00000438019 707 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXC9P31274 RPS15AP27-201ENST00000449183 343 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 RPS27P27-201ENST00000498779 255 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 FAM92A1P2-202ENST00000504766 877 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 CCDC34P1-201ENST00000507441 517 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 MTND3P25-201ENST00000509243 135 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 RNA5SP200-201ENST00000516360 103 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC9P31274 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXC9P31274 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXC9P31274 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXC9P31274 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXC9P31274 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXC9P31274 SNORA59B-202ENST00000578183 701 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXC9P31274 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXC9P31274 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXC9P31274 AC073539.2-201ENST00000597113 165 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AL355598.1-201ENST00000604169 202 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 NUTF2P8-201ENST00000604593 363 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC104458.1-201ENST00000608243 463 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC009318.2-201ENST00000610917 651 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 DISC2.1-201ENST00000612827 205 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 AC009831.4-201ENST00000620744 325 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 MIR219B-201ENST00000637023 88 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 MIR3662-201ENST00000637030 95 ntBASIC2.94□□□□□ -1.94
HOXC9P31274 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXC9P31274 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC9P31274 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXC9P31274 OR4G1P-203ENST00000641984 1631 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC9P31274 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC9P31274 RNU6-778P-201ENST00000363269 103 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 RNU1-51P-201ENST00000365345 176 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 RNU6-393P-201ENST00000384475 107 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AL356057.2-201ENST00000403318 432 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 RPL26P27-201ENST00000414397 437 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 AL669831.1-202ENST00000428504 417 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 GTF2IP13-201ENST00000438487 386 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 MTND3P16-201ENST00000452205 344 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC9P31274 RPS27AP10-201ENST00000496103 208 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AC108210.2-201ENST00000503681 201 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC9P31274 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC9P31274 AL117351.2-201ENST00000513571 157 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 SCARNA16.3-201ENST00000516595 184 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 SNORD60.2-201ENST00000516883 86 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.93□□□□□ -1.94
HOXC9P31274 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC9P31274 MIR4782-201ENST00000577987 79 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AL645944.1-201ENST00000603857 493 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 U6.42-201ENST00000618440 107 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 AP003400.5-201ENST00000624827 617 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 U2.21-201ENST00000637295 81 ntBASIC2.93□□□□□ -1.94
HOXC9P31274 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC9P31274 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC9P31274 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC9P31274 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXC9P31274 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXC9P31274 RNU6-1303P-201ENST00000364841 107 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 SNORA16.2-201ENST00000390991 127 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 SNORA11.4-201ENST00000408823 129 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 MTND1P23-201ENST00000416931 372 ntBASIC2.92□□□□□ -1.94
HOXC9P31274 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms