Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SNORA26.5-201ENST00000391215 123 ntBASIC4.4□□□□□ -1.71
MSX1P28360 MIR298-201ENST00000401212 88 ntBASIC4.4□□□□□ -1.71
MSX1P28360 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX1P28360 RPL39P29-201ENST00000447779 157 ntBASIC4.4□□□□□ -1.71
MSX1P28360 RPL26P9-201ENST00000457466 433 ntBASIC4.4□□□□□ -1.71
MSX1P28360 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX1P28360 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 RNA5SP392-201ENST00000516905 112 ntBASIC4.4□□□□□ -1.71
MSX1P28360 CYCSP40-201ENST00000575927 294 ntBASIC4.4□□□□□ -1.71
MSX1P28360 AC022726.1-201ENST00000587475 207 ntBASIC4.4□□□□□ -1.71
MSX1P28360 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.4□□□□□ -1.71
MSX1P28360 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX1P28360 AC011603.4-201ENST00000611325 277 ntBASIC4.4□□□□□ -1.71
MSX1P28360 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 AC022893.2-201ENST00000564832 3296 ntBASIC4.4□□□□□ -1.71
MSX1P28360 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.4□□□□□ -1.71
MSX1P28360 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX1P28360 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
MSX1P28360 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX1P28360 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
MSX1P28360 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSX1P28360 AL133383.2-201ENST00000622958 2336 ntBASIC4.39□□□□□ -1.71
MSX1P28360 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.39□□□□□ -1.71
MSX1P28360 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX1P28360 AC010329.5-201ENST00000623497 2174 ntBASIC4.39□□□□□ -1.71
MSX1P28360 RNA5SP191-201ENST00000362585 102 ntBASIC4.39□□□□□ -1.71
MSX1P28360 Y_RNA.287-201ENST00000364853 94 ntBASIC4.39□□□□□ -1.71
MSX1P28360 SNORD37.2-201ENST00000391075 66 ntBASIC4.39□□□□□ -1.71
MSX1P28360 RNU6-1197P-201ENST00000391183 107 ntBASIC4.39□□□□□ -1.71
MSX1P28360 EIF4HP2-201ENST00000424380 563 ntBASIC4.39□□□□□ -1.71
MSX1P28360 RPL18P10-201ENST00000425606 538 ntBASIC4.39□□□□□ -1.71
MSX1P28360 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX1P28360 CYCTP-201ENST00000504253 315 ntBASIC4.39□□□□□ -1.71
MSX1P28360 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX1P28360 TOMM20P2-201ENST00000540082 421 ntBASIC4.39□□□□□ -1.71
MSX1P28360 AC133555.2-201ENST00000550213 292 ntBASIC4.39□□□□□ -1.71
MSX1P28360 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX1P28360 AC074050.1-201ENST00000563247 211 ntBASIC4.39□□□□□ -1.71
MSX1P28360 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.39□□□□□ -1.71
MSX1P28360 AC009163.5-201ENST00000575421 637 ntBASIC4.39□□□□□ -1.71
MSX1P28360 IPO5P1-202ENST00000600039 287 ntBASIC4.39□□□□□ -1.71
MSX1P28360 FAM27B-201ENST00000610601 213 ntBASIC4.39□□□□□ -1.71
MSX1P28360 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.39□□□□□ -1.71
MSX1P28360 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX1P28360 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX1P28360 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
MSX1P28360 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX1P28360 AC068700.1-201ENST00000565862 3754 ntBASIC4.38□□□□□ -1.71
MSX1P28360 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.38□□□□□ -1.71
MSX1P28360 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSX1P28360 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSX1P28360 RNU4-10P-201ENST00000364383 140 ntBASIC4.38□□□□□ -1.71
MSX1P28360 Y_RNA.293-201ENST00000364908 93 ntBASIC4.38□□□□□ -1.71
MSX1P28360 MIR708-201ENST00000390708 88 ntBASIC4.38□□□□□ -1.71
MSX1P28360 RNA5SP332-201ENST00000391063 115 ntBASIC4.38□□□□□ -1.71
MSX1P28360 RNY4P18-201ENST00000391107 89 ntBASIC4.38□□□□□ -1.71
MSX1P28360 MIR320B2-201ENST00000408479 138 ntBASIC4.38□□□□□ -1.71
MSX1P28360 AC006461.1-201ENST00000412637 326 ntBASIC4.38□□□□□ -1.71
MSX1P28360 AL135790.2-201ENST00000437701 267 ntBASIC4.38□□□□□ -1.71
MSX1P28360 HMGB3P8-201ENST00000449709 577 ntBASIC4.38□□□□□ -1.71
MSX1P28360 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX1P28360 RPL21P126-201ENST00000470049 478 ntBASIC4.38□□□□□ -1.71
MSX1P28360 RPL30P5-201ENST00000494923 336 ntBASIC4.38□□□□□ -1.71
MSX1P28360 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.38□□□□□ -1.71
MSX1P28360 CYCSP26-201ENST00000534107 320 ntBASIC4.38□□□□□ -1.71
MSX1P28360 ATP5J2P6-201ENST00000565203 266 ntBASIC4.38□□□□□ -1.71
MSX1P28360 MIR5699-201ENST00000578903 90 ntBASIC4.38□□□□□ -1.71
MSX1P28360 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.38□□□□□ -1.71
MSX1P28360 AL022401.1-201ENST00000619498 108 ntBASIC4.38□□□□□ -1.71
MSX1P28360 MIR3529-201ENST00000637713 78 ntBASIC4.38□□□□□ -1.71
MSX1P28360 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.38□□□□□ -1.71
MSX1P28360 AC006971.1-201ENST00000407916 4486 ntBASIC4.38□□□□□ -1.71
MSX1P28360 ADAM3A-203ENST00000461344 2157 ntBASIC4.38□□□□□ -1.71
MSX1P28360 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.37□□□□□ -1.71
MSX1P28360 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
MSX1P28360 RNU6-884P-201ENST00000363889 107 ntBASIC4.37□□□□□ -1.71
MSX1P28360 SNORA70.2-201ENST00000364506 135 ntBASIC4.37□□□□□ -1.71
MSX1P28360 RNU6-1280P-201ENST00000365211 107 ntBASIC4.37□□□□□ -1.71
MSX1P28360 RNU6-1264P-201ENST00000383891 107 ntBASIC4.37□□□□□ -1.71
MSX1P28360 SNORA18.3-201ENST00000384122 132 ntBASIC4.37□□□□□ -1.71
MSX1P28360 MIR616-201ENST00000385293 97 ntBASIC4.37□□□□□ -1.71
MSX1P28360 U3.30-201ENST00000391308 210 ntBASIC4.37□□□□□ -1.71
MSX1P28360 RNA5SP390-201ENST00000410191 113 ntBASIC4.37□□□□□ -1.71
MSX1P28360 RNU6-1064P-201ENST00000410626 104 ntBASIC4.37□□□□□ -1.71
MSX1P28360 BX510359.2-201ENST00000417920 305 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AC019205.3-201ENST00000424573 156 ntBASIC4.37□□□□□ -1.71
MSX1P28360 snoU13.1-201ENST00000459157 104 ntBASIC4.37□□□□□ -1.71
MSX1P28360 RPS4XP13-201ENST00000483219 789 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.37□□□□□ -1.71
MSX1P28360 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.37□□□□□ -1.71
MSX1P28360 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.37□□□□□ -1.71
MSX1P28360 SNORA31.16-201ENST00000516773 139 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AC134698.5-201ENST00000519444 336 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.37□□□□□ -1.71
MSX1P28360 LARP7P3-201ENST00000579888 337 ntBASIC4.37□□□□□ -1.71
MSX1P28360 RN7SL690P-201ENST00000582087 240 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms