| TFE3 | P19532 | SYTL2-213 | ENST00000525702 | 2727 nt | TSL 1 (best) BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL391987.6-201 | ENST00000305671 | 199 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Y_RNA.20-201 | ENST00000362479 | 113 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNA5SP479-201 | ENST00000364858 | 117 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-843P-201 | ENST00000384454 | 104 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | TRAV34-201 | ENST00000390461 | 349 nt | APPRIS P1 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MRPL35P1-201 | ENST00000404272 | 572 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | FTH1P15-201 | ENST00000406984 | 280 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL357500.1-201 | ENST00000413004 | 279 nt | TSL 3 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RAC1P3-201 | ENST00000416129 | 580 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL160162.1-202 | ENST00000417654 | 244 nt | TSL 3 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC011742.1-201 | ENST00000431448 | 434 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC007969.2-201 | ENST00000441891 | 191 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HMGN2P10-201 | ENST00000448085 | 265 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL136987.2-201 | ENST00000457321 | 684 nt | TSL 3 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC01510-203 | ENST00000458082 | 626 nt | TSL 3 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNA5SP310-201 | ENST00000459084 | 116 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RPS23P5-201 | ENST00000495419 | 428 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC069360.1-201 | ENST00000503469 | 431 nt | TSL 2 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-1114P-201 | ENST00000516022 | 107 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Y_RNA.673-201 | ENST00000516306 | 88 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC007375.1-201 | ENST00000554513 | 578 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL132819.1-201 | ENST00000555595 | 208 nt | TSL 3 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC240442.1-201 | ENST00000616055 | 283 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AP001282.2-201 | ENST00000616149 | 309 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC048347.1-201 | ENST00000624621 | 427 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | CNTN6-205 | ENST00000446702 | 4513 nt | APPRIS P1 TSL 1 (best) BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ADAM3A-203 | ENST00000461344 | 2157 nt | BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MUC7-201 | ENST00000304887 | 2443 nt | APPRIS P2 TSL 1 (best) BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MBNL1-211 | ENST00000463374 | 5092 nt | APPRIS P4 TSL 1 (best) BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | XRN1-202 | ENST00000392981 | 5383 nt | APPRIS ALT1 TSL 1 (best) BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | CACNB4-233 | ENST00000636773 | 4143 nt | TSL 5 BASIC | 4.14 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SYNE2-204 | ENST00000358025 | 21842 nt | APPRIS P3 TSL 5 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MME-211 | ENST00000492661 | 2854 nt | APPRIS P1 TSL 2 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | IQCH-206 | ENST00000546225 | 3112 nt | TSL 5 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ST7-221 | ENST00000465133 | 2155 nt | TSL 5 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HAUS6P2-201 | ENST00000433254 | 2404 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SEC23A-202 | ENST00000537403 | 4215 nt | TSL 2 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC110491.1-201 | ENST00000562191 | 2010 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-1141P-201 | ENST00000364520 | 107 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU1-140P-201 | ENST00000365040 | 165 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SNORA29-201 | ENST00000384183 | 140 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU1-139P-201 | ENST00000391307 | 165 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MTHFD2P2-201 | ENST00000407725 | 247 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU2-64P-201 | ENST00000411315 | 191 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC239803.1-203 | ENST00000411978 | 452 nt | TSL 2 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC099548.1-201 | ENST00000421443 | 426 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL158209.1-201 | ENST00000433460 | 439 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL138900.2-201 | ENST00000434098 | 156 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC016700.2-201 | ENST00000446011 | 156 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SNRPGP5-201 | ENST00000456003 | 220 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC016632.1-201 | ENST00000503994 | 196 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC006445.2-201 | ENST00000510061 | 472 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC091874.1-201 | ENST00000511402 | 339 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | GNRHR2P1-201 | ENST00000555315 | 631 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC009163.5-201 | ENST00000575421 | 637 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR3609-201 | ENST00000582661 | 80 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ZCCHC10-201 | ENST00000324170 | 2178 nt | APPRIS P3 TSL 1 (best) BASIC | 4.13 | □□□□□ -1.75 | | |
| TFE3 | P19532 | NR3C1-202 | ENST00000343796 | 7286 nt | APPRIS P3 TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SCN3A-201 | ENST00000283254 | 9091 nt | APPRIS P3 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-222P-201 | ENST00000362438 | 107 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Y_RNA.143-201 | ENST00000363520 | 106 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-137P-201 | ENST00000363680 | 108 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RFX3-203 | ENST00000381984 | 364 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-541P-201 | ENST00000384709 | 110 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RPS4XP3-201 | ENST00000398541 | 413 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | UBA52P6-201 | ENST00000399822 | 382 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HSPE1P26-201 | ENST00000405341 | 275 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | BPY2DP-201 | ENST00000422208 | 265 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC01757-201 | ENST00000435552 | 480 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC083863.1-201 | ENST00000438811 | 231 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC013727.2-201 | ENST00000447761 | 545 nt | TSL 4 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL590664.1-201 | ENST00000448065 | 339 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC099794.1-201 | ENST00000450811 | 447 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL136164.1-201 | ENST00000456795 | 352 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HMGN2P16-201 | ENST00000456802 | 261 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MED28P2-201 | ENST00000475771 | 317 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RPS26P15-201 | ENST00000488067 | 348 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AF186996.7-201 | ENST00000492781 | 209 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ABCA17P-206 | ENST00000512848 | 467 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | CKS1BP7-201 | ENST00000522230 | 235 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC021739.1-201 | ENST00000559631 | 174 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC136932.1-201 | ENST00000574771 | 208 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR4659A-201 | ENST00000580269 | 81 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ZNF616-203 | ENST00000597013 | 577 nt | TSL 4 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR6500-201 | ENST00000622700 | 86 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | CAB39L-206 | ENST00000410043 | 1627 nt | APPRIS P1 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC01505-206 | ENST00000637046 | 4266 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MS4A14-208 | ENST00000531783 | 2910 nt | APPRIS ALT2 TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ABCC9-201 | ENST00000261200 | 8293 nt | APPRIS P5 TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | TM4SF18-201 | ENST00000296059 | 3852 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | DAZ4-202 | ENST00000382314 | 3910 nt | APPRIS ALT2 TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC010300.1-201 | ENST00000600671 | 5134 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | FAM169A-201 | ENST00000389156 | 5990 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MAP3K21-201 | ENST00000366622 | 4005 nt | TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SCAI-201 | ENST00000336505 | 12079 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | snoU2_19.2-201 | ENST00000363024 | 80 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-270P-201 | ENST00000364131 | 105 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-879P-201 | ENST00000364328 | 108 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Y_RNA.237-201 | ENST00000364439 | 102 nt | BASIC | 4.11 | □□□□□ -1.75 | | |