Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGA1P17096 ROCK1P1-201ENST00000573767 549 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 AC022387.2-201ENST00000604050 448 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 Z98751.3-201ENST00000604447 521 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 RAC1P9-201ENST00000604990 392 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 AC004908.3-201ENST00000610248 625 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.01□□□□□ -2.41
HMGA1P17096 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
HMGA1P17096 SNORD44.1-201ENST00000363202 61 ntBASIC0□□□□□ -2.41
HMGA1P17096 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
HMGA1P17096 RNU6-444P-201ENST00000383988 108 ntBASIC0□□□□□ -2.41
HMGA1P17096 RNU6-1237P-201ENST00000384777 107 ntBASIC0□□□□□ -2.41
HMGA1P17096 RN7SKP200-201ENST00000410564 320 ntBASIC0□□□□□ -2.41
HMGA1P17096 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0□□□□□ -2.41
HMGA1P17096 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0□□□□□ -2.41
HMGA1P17096 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0□□□□□ -2.41
HMGA1P17096 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0□□□□□ -2.41
HMGA1P17096 AC112771.1-201ENST00000463581 102 ntBASIC0□□□□□ -2.41
HMGA1P17096 AC098869.1-201ENST00000481627 292 ntBASIC0□□□□□ -2.41
HMGA1P17096 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0□□□□□ -2.41
HMGA1P17096 AC010620.1-201ENST00000601088 1102 ntBASIC0□□□□□ -2.41
HMGA1P17096 AP003465.2-201ENST00000602571 373 ntBASIC0□□□□□ -2.41
HMGA1P17096 KATNBL1P5-201ENST00000605015 517 ntBASIC0□□□□□ -2.41
HMGA1P17096 AC063976.4-201ENST00000421971 163 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 UBE2V1P8-201ENST00000437166 265 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 AL096829.2-201ENST00000446582 742 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC-0.01□□□□□ -2.41
HMGA1P17096 AC022493.2-201ENST00000506122 481 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC-0.01□□□□□ -2.41
HMGA1P17096 PTP4A1P4-201ENST00000512479 322 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 AC109329.1-201ENST00000518744 317 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 C1DP5-201ENST00000525775 383 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGA1P17096 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGA1P17096 AC090330.1-201ENST00000588646 764 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 AC091057.3-201ENST00000602684 733 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 AC112220.2-201ENST00000605513 533 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGA1P17096 AC068205.3-201ENST00000636385 468 ntBASIC-0.01□□□□□ -2.41
HMGA1P17096 MIR411-201ENST00000362239 96 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AC127391.1-201ENST00000411737 98 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AL353706.1-201ENST00000436728 494 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC-0.02□□□□□ -2.41
HMGA1P17096 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC-0.02□□□□□ -2.41
HMGA1P17096 RAB11AP1-201ENST00000442978 646 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AL441985.1-201ENST00000457727 251 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC-0.02□□□□□ -2.41
HMGA1P17096 HMGN1P10-201ENST00000474557 553 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC-0.02□□□□□ -2.41
HMGA1P17096 RN7SKP12-201ENST00000516275 143 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC-0.02□□□□□ -2.41
HMGA1P17096 EIF4A1P12-201ENST00000551910 141 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 MIR4768-201ENST00000585270 74 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AC091152.3-201ENST00000604227 325 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AL353765.1-201ENST00000605514 183 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC-0.02□□□□□ -2.41
HMGA1P17096 AC009032.1-201ENST00000617574 431 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 AC022513.1-201ENST00000624512 117 ntBASIC-0.02□□□□□ -2.41
HMGA1P17096 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC-0.02□□□□□ -2.41
HMGA1P17096 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC-0.03□□□□□ -2.41
HMGA1P17096 RNU6-611P-201ENST00000384276 104 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 SNORD51-201ENST00000384320 80 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 MIR548B-201ENST00000385247 97 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 RNU2-47P-201ENST00000410649 186 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 AC010385.1-201ENST00000412374 256 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC-0.03□□□□□ -2.41
HMGA1P17096 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC-0.03□□□□□ -2.41
HMGA1P17096 RPS26P45-201ENST00000471748 340 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 AL121579.1-201ENST00000555129 305 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC-0.03□□□□□ -2.41
HMGA1P17096 CLIC4P2-201ENST00000601934 717 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 AC004775.1-201ENST00000607389 753 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 ATM-228ENST00000639240 498 ntTSL 5 BASIC-0.03□□□□□ -2.41
HMGA1P17096 AC092447.10-201ENST00000620607 1652 ntBASIC-0.03□□□□□ -2.41
HMGA1P17096 SNORD114-16-201ENST00000363044 70 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 Y_RNA.295-201ENST00000364918 102 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 RNU6-1327P-201ENST00000365302 105 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 RNU6-910P-201ENST00000390844 107 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-0.04□□□□□ -2.42
HMGA1P17096 AC011005.2-201ENST00000487324 359 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AP000763.2-201ENST00000540641 163 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC-0.04□□□□□ -2.42
HMGA1P17096 TRAV32-201ENST00000553993 340 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AC015688.6-201ENST00000577737 104 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AC060771.1-201ENST00000582031 164 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC-0.04□□□□□ -2.42
HMGA1P17096 AF129408.1-201ENST00000608767 431 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 AC009318.4-201ENST00000620496 486 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC-0.04□□□□□ -2.42
HMGA1P17096 AC008993.2-201ENST00000631744 806 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 MIR371B-201ENST00000638082 66 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC-0.04□□□□□ -2.42
HMGA1P17096 PCF11-AS1-201ENST00000602322 1516 ntBASIC-0.04□□□□□ -2.42
HMGA1P17096 RNU6-23P-201ENST00000363283 107 ntBASIC-0.05□□□□□ -2.42
HMGA1P17096 RNU6-743P-201ENST00000364151 106 ntBASIC-0.05□□□□□ -2.42
HMGA1P17096 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.05□□□□□ -2.42
HMGA1P17096 RNU4-45P-201ENST00000365469 141 ntBASIC-0.05□□□□□ -2.42
HMGA1P17096 Y_RNA.412-201ENST00000384001 104 ntBASIC-0.05□□□□□ -2.42
HMGA1P17096 SNORD12-201ENST00000391002 90 ntBASIC-0.05□□□□□ -2.42
HMGA1P17096 RPL21P111-201ENST00000418453 477 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms