Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNA5SP210-201ENST00000391034 120 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 AC068050.1-201ENST00000394891 380 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP1O15259 AC007064.1-201ENST00000412238 351 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 BTF3L4P1-201ENST00000413813 468 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 DPH3P2-201ENST00000422618 250 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP1O15259 RPL23AP11-201ENST00000475260 469 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 RN7SL297P-201ENST00000483161 293 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP1O15259 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.13□□□□□ -1.91
NPHP1O15259 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NPHP1O15259 AC136619.2-201ENST00000563361 631 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 MTCO3P13-201ENST00000577757 781 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP1O15259 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.13□□□□□ -1.91
NPHP1O15259 AC078795.2-201ENST00000602835 1252 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 AC006020.1-201ENST00000420179 1854 ntBASIC3.13□□□□□ -1.91
NPHP1O15259 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.13□□□□□ -1.91
NPHP1O15259 RNU1-72P-201ENST00000362976 153 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 RAP1BP3-201ENST00000407180 549 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 RNU2-29P-201ENST00000410423 189 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 RN7SKP223-201ENST00000410582 62 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AL663109.1-201ENST00000411498 844 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.12□□□□□ -1.91
NPHP1O15259 AL353193.1-201ENST00000421444 268 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 RPS3AP44-201ENST00000425466 790 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.12□□□□□ -1.91
NPHP1O15259 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.12□□□□□ -1.91
NPHP1O15259 SNORA43.2-201ENST00000516652 128 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 CKS1BP7-201ENST00000522230 235 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.12□□□□□ -1.91
NPHP1O15259 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.12□□□□□ -1.91
NPHP1O15259 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 MTATP6P3-201ENST00000581686 676 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AC091805.2-201ENST00000603848 235 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AC021646.1-201ENST00000605469 484 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 NDUFA8P1-201ENST00000605525 367 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AL121917.1-203ENST00000605534 577 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.12□□□□□ -1.91
NPHP1O15259 AC007684.1-201ENST00000609671 477 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AC026585.1-201ENST00000619582 524 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 RMST_7.1-201ENST00000621935 268 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 AL031601.2-202ENST00000622650 282 ntBASIC3.12□□□□□ -1.91
NPHP1O15259 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.12□□□□□ -1.91
NPHP1O15259 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
NPHP1O15259 Y_RNA.1-201ENST00000352915 104 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 RNU6-552P-201ENST00000362869 119 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 RNU6-487P-201ENST00000365430 104 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 SNORD116-20-201ENST00000384529 92 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 RNU6-1127P-201ENST00000384580 107 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 RNU6-903P-201ENST00000391270 109 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AL359511.1-201ENST00000402970 211 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 RNU2-66P-201ENST00000410650 161 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
NPHP1O15259 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.11□□□□□ -1.91
NPHP1O15259 AL356320.1-201ENST00000429616 163 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 USP9YP14-201ENST00000430663 563 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
NPHP1O15259 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.11□□□□□ -1.91
NPHP1O15259 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
NPHP1O15259 RNU7-63P-201ENST00000459054 62 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 DYNLL1P5-201ENST00000467158 270 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC008526.1-201ENST00000509149 338 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 LRRC34P2-201ENST00000514850 553 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 BNIP3P6-201ENST00000549284 499 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC080013.6-201ENST00000606185 215 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC096772.1-201ENST00000609146 564 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 Z99129.1-201ENST00000612510 255 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 MIR6873-201ENST00000622788 63 ntBASIC3.11□□□□□ -1.91
NPHP1O15259 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.11□□□□□ -1.91
NPHP1O15259 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.11□□□□□ -1.91
NPHP1O15259 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
NPHP1O15259 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
NPHP1O15259 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.1□□□□□ -1.91
NPHP1O15259 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NPHP1O15259 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
NPHP1O15259 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
NPHP1O15259 RNU6-1303P-201ENST00000364841 107 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 RNA5SP125-201ENST00000364843 120 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 RNU6-1042P-201ENST00000384204 107 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 RNU6-622P-201ENST00000384272 103 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 AL591416.1-201ENST00000404015 867 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 HMGB1P31-201ENST00000437242 427 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 RPL7P12-201ENST00000446719 750 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 AC006026.2-201ENST00000457376 180 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 AC008571.1-201ENST00000467232 300 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 AP000852.1-201ENST00000472460 573 ntBASIC3.1□□□□□ -1.91
NPHP1O15259 AP001025.1-201ENST00000486139 332 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 727 ms